Factsheet for TraesCS1A01G114600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03730.t01	Wine grape	mitochondrion, nucleus, plastid	27.89	60.42
TraesCS1B01G134500.1	Wheat	cytosol	96.93	49.71
TraesCS3A01G455500.1	Wheat	nucleus	86.61	44.52
Os04t0492300-01	Rice	nucleus	82.15	42.59
EES11045	Sorghum	nucleus	79.5	40.98
Zm00001d003203_P003	Maize	cytosol	78.52	40.39
GSMUA_Achr5P29280_001	Banana	nucleus	72.66	32.87
Solyc11g072730.1.1	Tomato	nucleus	61.51	31.73
KRG88695	Soybean	nucleus	58.16	29.98
CDY09230	Canola	nucleus	56.35	29.49
Bra020267.1-P	Field mustard	nucleus	56.35	29.49
AT5G60040.2	Thale cress	cytosol	56.9	29.33
VIT_06s0004g03740.t01	Wine grape	nucleus	33.47	22.37
TraesCS7A01G301900.1	Wheat	nucleus	34.31	13.23
TraesCS2A01G558100.1	Wheat	nucleus	33.61	12.97
HORVU1Hr1G025160.5	Barley	cytosol	12.13	11.4
TraesCS4A01G357100.1	Wheat	nucleus	25.52	11.06
TraesCS7A01G180700.1	Wheat	cytosol	10.88	8.96
TraesCS1A01G106300.1	Wheat	nucleus	15.76	7.93
TraesCS3A01G513100.1	Wheat	plastid	14.23	6.16
TraesCS6A01G123800.1	Wheat	nucleus	16.46	6.03
TraesCS1A01G114500.1	Wheat	nucleus	1.26	1.3

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.150.390	MapMan:15.1.3.1	Gene3D:2.20.25.410
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR038120	PFAM:PF04998	PFAM:PF05000	PANTHER:PTHR19376	PANTHER:PTHR19376:SF32
InterPro:RNAP_III_Rpc1_C	InterPro:RNA_pol_Rpb1_4	InterPro:RNA_pol_Rpb1_5	InterPro:Rpb1_funnel_sf	SUPFAM:SSF64484	EnsemblPlantsGene:TraesCS1A01G114600
EnsemblPlants:TraesCS1A01G114600.1	TIGR:cd02736	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:118809687..118815367

Molecular Weight (calculated)

79318.6 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.178

Length

717 amino acids

Sequence
(BLAST)

001: MRLGLGRWRL SSARFIGNHG FSIGVDDVQP GESLNQKKKI TIDIEYEKCH ELIALYSKGD LIPQPGCNRA QTLESQISCV LNNLRETAGD DCMSTLHWRN
101: SPLIMSQCGS KGSPINISQM VVCVGQQSVG GRRAPNGFID RTLPHFPINS KTPAAKGFVA NSFYTGLTAT EFFFHTMGGR EGLVDTAVKT AETGYMSRRL
201: MKGLEDLSVF YDQTVRNASG GIVQFVYGDD GMDPVKMEGK GGRPLNLDQL FMKVMATCPQ RGHDTLSPEL ILQIFNDKLS GQDASSGGCS DKFKEMLTKF
301: FEDRIKMLRS TRRALQLDED RVGKRDSSIE ERVAADISGI SAKQLQVFLD TCLSRYHSKI IEAGASIGAI GAQSIGEPGT QMTLKTFHFA GVASMNVTLG
401: VPRIKEIISA VKKISTPIIT TELLSEQDEL FAAKVKRSIE KVVLGEVAAA IKIVLKSNQP YLVVELDMQR TEGYMGISSD TVQFSILNDP KIKLKSEHVR
501: VIDEAKLRIY PTGKDKSKLQ LELHNLKSML PKLIVKGISS VERAVVNPVL RRDGTFDRYN LLVEGTNLMK VLGTPGVDAK RTKSNHILEV NKTLGIEAAR
601: RSIIDEIRYT FENNNMMIDL RHMMLLADLM TYKGEILGIT AGGIAKMKSS VLMLSSFERA SEHLFNASYA GREDQIEGVS ECIIMGIPMQ LGTGILKVRQ
701: RLQDLPEFKY QPDPILL

Best Arabidopsis Sequence Match ( AT3G57660.2 )
(BLAST)

0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL

Arabidopsis Description

NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.