Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G297100.1 | Wheat | nucleus | 99.84 | 99.84 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 99.41 | 99.78 |
| EES13372 | Sorghum | nucleus | 94.03 | 94.13 |
| Zm00001d024583_P003 | Maize | nucleus | 93.49 | 93.95 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 93.28 | 93.33 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 54.92 | 91.0 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 42.23 | 90.13 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.75 | 88.31 |
| KRH28855 | Soybean | nucleus | 85.96 | 87.47 |
| KRH76591 | Soybean | nucleus | 85.69 | 87.19 |
| Solyc02g083350.2.1 | Tomato | nucleus | 86.55 | 87.16 |
| PGSC0003DMT400009249 | Potato | nucleus | 86.12 | 87.06 |
| KRH40807 | Soybean | nucleus | 81.44 | 85.44 |
| Bra010510.1-P | Field mustard | nucleus | 83.54 | 85.14 |
| AT4G35800.1 | Thale cress | nucleus | 83.97 | 84.88 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 63.04 | 83.24 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.73 | 82.58 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.26 | 81.82 |
| CDY08876 | Canola | nucleus | 70.36 | 80.79 |
| CDY71816 | Canola | cytosol | 11.83 | 77.19 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.65 | 74.05 |
| Bra011638.1-P | Field mustard | nucleus | 80.04 | 54.93 |
| CDX75527 | Canola | nucleus | 79.72 | 54.57 |
| CDX69166 | Canola | cytosol | 77.19 | 54.36 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 13.23 | 34.31 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 25.34 | 33.76 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 11.78 | 31.6 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 20.44 | 22.96 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 14.42 | 18.81 |
| TraesCS3A01G513100.1 | Wheat | plastid | 15.12 | 16.96 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 17.21 | 16.34 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.2.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 | Gene3D:3.30.1490.180 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | InterPro:IPR038593 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04990 | PFAM:PF04992 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PFAM:PF05001 |
| PRINTS:PR01217 | ScanProsite:PS00115 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_II_repeat_euk | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 | InterPro:RNA_pol_Rpb1_7 |
| InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS7A01G301900 |
| EnsemblPlants:TraesCS7A01G301900.1 | TIGR:cd02584 | TIGR:cd02733 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:-:421778627..421786819
Molecular Weight (calculated)
206696.0 Da
IEP (calculated)
5.759
GRAVY (calculated)
-0.478
Length
1859 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFPYSPA EVAKVQLVQF GILSPDEIRQ MSVVVIEHAE TMERGKAKPG GLSDPRLGTI DRKIKCDTCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADEDDTK FKQALKIRNP KNRLRRIYDA CKSKKICAGG DELEVQDQQD ADEPVKKRGG CGAQQPNITV DGMKMVAEFK ATKKKSDDQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPKFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKITKR DTLIEKDVFM NILMWWEDFD GKVPAPAILR PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TESGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD AATMEKINET
0701: IGTAKNEVKE LIKQAQEKNL EPEPGRTMME SFENRVNQVL NKARDDAGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKAE FDNVFRYELD DENWRPTYML PDHVDDLKTI REFRNVFEAE VQKLEADRLQ LGTEITTTGD NTWPMPVNLK RLIWNAQKTF KIDLRRPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLFFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVFLK PEVSKKKELA KNVQCALEYT TLRSVTHATE IWYDPDPLGT IIEEDVEFVR SYYEMPDEDI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIT NDEAPKGEIQ DESAEDDVFL KKIEGNMLTE MALRGIPDIN
1301: KVFIKYGKVN KFDESEGFKP DNEWMLDTEG VNLLAVMCHE DVDSTRTTSN HLIEVIEVLG IEAVRRSLLD ELRVVISFDG SYVNYRHLAI LCDTMTYRGH
1401: LMAITRHGIN RNDTGPLMRC SFEETVDILL DAAVYAESDY LRGVTENIML GQLAPIGTGG CGLYLNDQML QQAIELQLPS YVEGLDYGMT PARSPMSATP
1501: YRDGGMMSPM LSPNFRASPI TDAQFSPYVG GMAFSPVPSN YSPSSGGGYS PSSPVFSPGP GHGYSPTSPS YSPASPSYSP TSPSYTPGSP SYSPTSPSYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPVYSP TSPAYSPTSP AYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPTSPS YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPNYSPTS PSYNPSSAKY SPSHAYSPSS PRMMSPYSQT SPNYSPTSPT YSPTSPSYAQ
1801: PSPSYSPTSP HTTSGGPSPD YSPTSPNYSP SASYSPTAPG YSPSSTGPQT TDKDDETVD
0101: IMRCVCFNCS KILADEDDTK FKQALKIRNP KNRLRRIYDA CKSKKICAGG DELEVQDQQD ADEPVKKRGG CGAQQPNITV DGMKMVAEFK ATKKKSDDQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPKFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKITKR DTLIEKDVFM NILMWWEDFD GKVPAPAILR PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TESGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD AATMEKINET
0701: IGTAKNEVKE LIKQAQEKNL EPEPGRTMME SFENRVNQVL NKARDDAGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKAE FDNVFRYELD DENWRPTYML PDHVDDLKTI REFRNVFEAE VQKLEADRLQ LGTEITTTGD NTWPMPVNLK RLIWNAQKTF KIDLRRPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLFFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVFLK PEVSKKKELA KNVQCALEYT TLRSVTHATE IWYDPDPLGT IIEEDVEFVR SYYEMPDEDI
1201: DPDKISPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIT NDEAPKGEIQ DESAEDDVFL KKIEGNMLTE MALRGIPDIN
1301: KVFIKYGKVN KFDESEGFKP DNEWMLDTEG VNLLAVMCHE DVDSTRTTSN HLIEVIEVLG IEAVRRSLLD ELRVVISFDG SYVNYRHLAI LCDTMTYRGH
1401: LMAITRHGIN RNDTGPLMRC SFEETVDILL DAAVYAESDY LRGVTENIML GQLAPIGTGG CGLYLNDQML QQAIELQLPS YVEGLDYGMT PARSPMSATP
1501: YRDGGMMSPM LSPNFRASPI TDAQFSPYVG GMAFSPVPSN YSPSSGGGYS PSSPVFSPGP GHGYSPTSPS YSPASPSYSP TSPSYTPGSP SYSPTSPSYS
1601: PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPVYSP TSPAYSPTSP AYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPTSPS YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPNYSPTS PSYNPSSAKY SPSHAYSPSS PRMMSPYSQT SPNYSPTSPT YSPTSPSYAQ
1801: PSPSYSPTSP HTTSGGPSPD YSPTSPNYSP SASYSPTAPG YSPSSTGPQT TDKDDETVD
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.