Factsheet for TraesCS1A01G114500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G025160.5	Barley	cytosol	92.35	83.88
TraesCS1B01G134500.1	Wheat	cytosol	97.55	48.35
TraesCS3A01G455500.1	Wheat	nucleus	81.67	40.57
Os04t0492300-01	Rice	nucleus	80.09	40.13
VIT_06s0004g03740.t01	Wine grape	nucleus	61.47	39.7
EES11045	Sorghum	nucleus	76.62	38.17
Zm00001d003203_P003	Maize	cytosol	76.48	38.02
GSMUA_Achr5P29280_001	Banana	nucleus	69.99	30.6
Solyc11g072730.1.1	Tomato	nucleus	60.46	30.14
KRG88695	Soybean	nucleus	60.32	30.05
CDY09230	Canola	nucleus	58.3	29.49
Bra020267.1-P	Field mustard	nucleus	58.3	29.49
AT5G60040.2	Thale cress	cytosol	58.44	29.12
TraesCS7A01G180700.1	Wheat	cytosol	29.87	23.77
TraesCS2A01G558100.1	Wheat	nucleus	31.89	11.89
TraesCS7A01G301900.1	Wheat	nucleus	31.6	11.78
TraesCS4A01G357100.1	Wheat	nucleus	27.99	11.72
TraesCS1A01G106300.1	Wheat	nucleus	19.34	9.4
TraesCS3A01G513100.1	Wheat	plastid	17.46	7.3
TraesCS6A01G123800.1	Wheat	nucleus	18.33	6.49
TraesCS1A01G114600.1	Wheat	mitochondrion	1.3	1.26
VIT_06s0004g03730.t01	Wine grape	mitochondrion, nucleus, plastid	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.274.100	Gene3D:1.20.120.1280	Gene3D:2.40.40.20	Gene3D:3.30.1490.180
MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	PFAM:PF00623	PFAM:PF04983	PFAM:PF04997	PANTHER:PTHR19376
PANTHER:PTHR19376:SF32	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_asu	SMART:SM00663
SUPFAM:SSF64484	EnsemblPlantsGene:TraesCS1A01G114500	EnsemblPlants:TraesCS1A01G114500.1	:	:	:

Description

No Description!

Coordinates

chr1A:+:118761484..118767307

Molecular Weight (calculated)

78625.2 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.401

Length

693 amino acids

Sequence
(BLAST)

001: MAAARWQQQG EAQKLRCTKE PYVDDDGTHR IKSMRFSTLS GGEVRKSAEA QVYNGWIYDE NRKPAPGGLL DTRMGAANKF GECTTCHGSY TECPGHFGYI
101: KLALPVFNVG FFNSTVNVLK CICKRCSRVL LSEKDRQEFL KRMRNLRAEV LHKSVILSKV RDKCRPCRCH WCGYMNGVTK KGPKDRGGLA IVHDCSKTLD
201: RTTEELRSAL SHKKEKLSFP SVHLLDPQTV LALFTRMTDE DCELLNLGDR PEKLIITEIA VPPVPIRPSV FVGGNKMSNE HSITCILKNI VTANHIIKEA
301: LKKGESPVNC FNSWQDLQLQ VIEYINSDAP SLSDSQHRGL MQRLKGKTGR FRGNLSGKRT EYTGRTVISP DPNLRITEVA IPVLMARVLT YPERVSYHNI
401: EKLRQCIQNG PNKHPGANFI IQSDGTKLHL KYADRRIAAR DLKYGCIVER HLEDGDIVLF NRQPSLHRMS IMSHRARIMP WRTLRFNESV CNPYNADFDG
501: DEMNLHVPQT EEARTEALML MGVQNNLCTP KNGEILVAST QDFLTSSFLV TRKDTFYDRS YFTLLCSYLG DAMEYIDLPT PALIKPIELW TGKQLFSVLV
601: RPNACTKVFL NLTVEEKIYM KLKERDKKAI TVLEETMCPN DGFVYFRNSE LLCGQVGKKT LGNGNNEGMF SVLIRDYNSH AAASCMNRLA KFR

Best Arabidopsis Sequence Match ( AT5G60040.1 )
(BLAST)

0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS

Arabidopsis Description

NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.