Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G522400.1 | Wheat | plastid | 92.15 | 94.84 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 85.76 | 92.63 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 69.76 | 90.24 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 19.73 | 86.05 |
| KXG34194 | Sorghum | nucleus | 56.0 | 58.85 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 21.0 | 58.29 |
| Os02t0152800-01 | Rice | cytosol | 15.81 | 53.69 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 42.06 | 35.6 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 18.11 | 21.05 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 10.44 | 19.86 |
| Os02t0152600-01 | Rice | plasma membrane | 3.26 | 19.22 |
| Os02t0152700-01 | Rice | nucleus | 4.47 | 17.79 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 7.3 | 17.46 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 13.28 | 15.77 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 16.96 | 15.12 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 16.84 | 15.02 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 6.16 | 14.23 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 13.4 | 13.41 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS3A01G513100 | EnsemblPlants:TraesCS3A01G513100.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:732476107..732485122
Molecular Weight (calculated)
183163.0 Da
IEP (calculated)
8.090
GRAVY (calculated)
-0.415
Length
1657 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSQPSSLT TQLPRSLTLT QLSSNRSIHR CSSPKAPAME TAMEAGDDPA FVAEGTVTSI RLAVASNQEI VKAQPMKEEF PVTHPSQLAG NPALGLPLQL
0101: GHCDSCGATD LAKCEGHFGF IKLPVSVYHP SHITELTKIL NMICFSCLQF KNCKKQKSVE KESNFTSCSY CQDLPPIHVA KVKKSNGALT LELRVPSRKE
0201: LEEGFWSFLD QFGFHTKGSS HCRRLFAEEV QKIMEKISEK TRRQIAAKGY ILQDGFVMSN LPVPPNCLRA YNVLDETIMC SPDASTNLLR KIVLNVHRIN
0301: NSRVGPPTFK EHEVEADDLQ LAIADYIKHA GTARGPQDIT FKSLPATKQW QQKMKALCIS KSSSFSCRGV ITGDPYIPMN VVGVPDEVAR RMSVEERVTD
0401: YNIAQLQGMM DRGLCLTHED ANSITHSLDV GKANKKRTIL KVGETVNRRI LDGDAVFVNR PPSTDKHSVQ AMYVRVHTDH TIKINPLICG PLGADFDGDC
0501: VHIFFPRSVS ARAEAIELFT VEKQLVSSHN AKLNFQLKND CLLALKKMSA RKYSRMEANE LINAMFTAGL IPMKRLSGGP EWSFAQILET VLPQENKILI
0601: RDLVAGTITI SSVLSMKNPR EAIEFLNLLQ PLLMESLFTD GFSVSLRDFN VQNPIPQTIQ HQTLDLDKLR KPIVDFITSS DIRFLVDQKR DSAMTKVVEQ
0701: IGFLGHQLQR NGRLYSGSLV EDCVSKSLSK CGSSTNGCHP LEAHGFVRNS FCNGLNPYED LLHSISAREK TIRASKGLVE PGVLFKNMMA MLRDVVACYD
0801: GTIRNSCGNS VVKFDSTDSS SSVTPGDPVG ILAATAVTNA AYKAVLDPNQ NNMASWDSMK EVLLTRAGSR NENDQKIILY LNKCSCGNNF CMERASLAVQ
0901: ACLKRTKVED CATEFSIHYQ QQNIQATHCL VGHIHLDKKQ LDEMNISMQG ILQKCQEEIY RCGKKKGQVN QLMKRVVISS EYMCYQDADD EEQVSCLQFF
1001: LTKSVTTQSE SSARVVQLMA NTISPILLDT IIKGDPRVQE VNIIWVEPQD TCWVQNSGTE QKGELALVIT MDKDSTGESG DVWGTAMDAC IPVMDLIDTT
1101: RSVPYSIQGV REGFGISSAF GRVTQHLSKA VGMVTKSVLE EHLTTVASSM TCTGNLHGFN SYGYKATFKA LKIQAPFMKA TLARPLQCFE EGAEKVYSDQ
1201: LDSVVSTCSW GNPAPIGTGS AFKIHWNDEN MLAGDENLGG YGLYEFLTDV ETTRATEDNI IVPYGSCLYD VDNLEEDEIE EDGVLCLGGN SPISWTDRPK
1301: ANLLLHDLQG WRAEQGHQKV PAANWQHGKH VATESSATGG WNQSSSTTKV YQRRQRNSNW SSDVMQQDGN PSWNKAYVAG PSNTAITGPT SGTSGWNQSR
1401: STTKVYQRRQ RDGNWTSDAT QEDGNPSWKK ANVASQGNFA ITGPSSSGGW SRKTNNVGRG RGGGRGAVWK SEGSHRGGNS RWKAQRVNTT SAPNFHISGP
1501: SNYGGRNIKT GNLGPSRGRG PAWRSKGPNR GGSNSGQQGS SNFTLAEQQI HAQVDPIMKE VKRIIRESRD GIKLSGDDEK FIVENILMYH PEKEKKMAGN
1601: NNYIMVAKHQ KFHSSRCLYV ASSDGPPTDF SYKKCLENMI RIHYPHEASS FCRKYFQ
0101: GHCDSCGATD LAKCEGHFGF IKLPVSVYHP SHITELTKIL NMICFSCLQF KNCKKQKSVE KESNFTSCSY CQDLPPIHVA KVKKSNGALT LELRVPSRKE
0201: LEEGFWSFLD QFGFHTKGSS HCRRLFAEEV QKIMEKISEK TRRQIAAKGY ILQDGFVMSN LPVPPNCLRA YNVLDETIMC SPDASTNLLR KIVLNVHRIN
0301: NSRVGPPTFK EHEVEADDLQ LAIADYIKHA GTARGPQDIT FKSLPATKQW QQKMKALCIS KSSSFSCRGV ITGDPYIPMN VVGVPDEVAR RMSVEERVTD
0401: YNIAQLQGMM DRGLCLTHED ANSITHSLDV GKANKKRTIL KVGETVNRRI LDGDAVFVNR PPSTDKHSVQ AMYVRVHTDH TIKINPLICG PLGADFDGDC
0501: VHIFFPRSVS ARAEAIELFT VEKQLVSSHN AKLNFQLKND CLLALKKMSA RKYSRMEANE LINAMFTAGL IPMKRLSGGP EWSFAQILET VLPQENKILI
0601: RDLVAGTITI SSVLSMKNPR EAIEFLNLLQ PLLMESLFTD GFSVSLRDFN VQNPIPQTIQ HQTLDLDKLR KPIVDFITSS DIRFLVDQKR DSAMTKVVEQ
0701: IGFLGHQLQR NGRLYSGSLV EDCVSKSLSK CGSSTNGCHP LEAHGFVRNS FCNGLNPYED LLHSISAREK TIRASKGLVE PGVLFKNMMA MLRDVVACYD
0801: GTIRNSCGNS VVKFDSTDSS SSVTPGDPVG ILAATAVTNA AYKAVLDPNQ NNMASWDSMK EVLLTRAGSR NENDQKIILY LNKCSCGNNF CMERASLAVQ
0901: ACLKRTKVED CATEFSIHYQ QQNIQATHCL VGHIHLDKKQ LDEMNISMQG ILQKCQEEIY RCGKKKGQVN QLMKRVVISS EYMCYQDADD EEQVSCLQFF
1001: LTKSVTTQSE SSARVVQLMA NTISPILLDT IIKGDPRVQE VNIIWVEPQD TCWVQNSGTE QKGELALVIT MDKDSTGESG DVWGTAMDAC IPVMDLIDTT
1101: RSVPYSIQGV REGFGISSAF GRVTQHLSKA VGMVTKSVLE EHLTTVASSM TCTGNLHGFN SYGYKATFKA LKIQAPFMKA TLARPLQCFE EGAEKVYSDQ
1201: LDSVVSTCSW GNPAPIGTGS AFKIHWNDEN MLAGDENLGG YGLYEFLTDV ETTRATEDNI IVPYGSCLYD VDNLEEDEIE EDGVLCLGGN SPISWTDRPK
1301: ANLLLHDLQG WRAEQGHQKV PAANWQHGKH VATESSATGG WNQSSSTTKV YQRRQRNSNW SSDVMQQDGN PSWNKAYVAG PSNTAITGPT SGTSGWNQSR
1401: STTKVYQRRQ RDGNWTSDAT QEDGNPSWKK ANVASQGNFA ITGPSSSGGW SRKTNNVGRG RGGGRGAVWK SEGSHRGGNS RWKAQRVNTT SAPNFHISGP
1501: SNYGGRNIKT GNLGPSRGRG PAWRSKGPNR GGSNSGQQGS SNFTLAEQQI HAQVDPIMKE VKRIIRESRD GIKLSGDDEK FIVENILMYH PEKEKKMAGN
1601: NNYIMVAKHQ KFHSSRCLYV ASSDGPPTDF SYKKCLENMI RIHYPHEASS FCRKYFQ
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.