Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G515800.1 | Wheat | nucleus | 96.44 | 96.32 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 94.74 | 94.12 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 86.59 | 80.6 |
| Zm00001d029055_P010 | Maize | nucleus | 64.23 | 62.9 |
| KXG22455 | Sorghum | nucleus | 64.71 | 61.84 |
| Os06t0612200-01 | Rice | nucleus | 8.34 | 58.23 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 50.45 | 55.74 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.54 | 50.41 |
| CDY65464 | Canola | nucleus | 27.13 | 47.92 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 48.28 | 47.25 |
| Solyc10g080350.1.1 | Tomato | nucleus | 46.89 | 46.27 |
| CDY06084 | Canola | nucleus | 42.48 | 46.22 |
| CDX67702 | Canola | nucleus | 41.99 | 46.06 |
| KRH33046 | Soybean | nucleus | 45.86 | 45.97 |
| CDX72007 | Canola | nucleus | 42.24 | 45.54 |
| Bra003294.1-P | Field mustard | nucleus | 43.32 | 45.38 |
| KRH71957 | Soybean | nucleus | 35.05 | 45.03 |
| Bra007345.1-P | Field mustard | nucleus | 44.41 | 44.82 |
| AT3G57660.1 | Thale cress | nucleus | 44.41 | 44.01 |
| CDY65462 | Canola | nucleus | 9.12 | 42.18 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 11.72 | 27.99 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 13.96 | 26.52 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 22.11 | 26.24 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 11.06 | 25.52 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 23.14 | 20.61 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 22.96 | 20.44 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 14.26 | 16.56 |
| TraesCS3A01G513100.1 | Wheat | plastid | 13.41 | 13.4 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 14.92 | 12.61 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | ncoils:Coil |
| InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS4A01G357100 | EnsemblPlants:TraesCS4A01G357100.1 | TIGR:cd01435 | SEG:seg | : |
Description
No Description!
Coordinates
chr4A:+:630758795..630771432
Molecular Weight (calculated)
185117.0 Da
IEP (calculated)
7.053
GRAVY (calculated)
-0.514
Length
1655 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEQEQATSVE VDSILFGFYT DDEVRRLSVK RLTRSERLDA KMCPVPGGLL DPAMGPVNAN DTCKTCAQQP GNCPGHFGHI ELSKPLFNPL LFDTLRDLLR
0101: STCFTCRKFR LSAQLVDRYA RELELLARGD VVQAKNLQDS AVSEESVEMD EDGSVDKPAP PSDRGNKIWT SIQLKEAHSI FSKLMKKRVN KCANCGMKNP
0201: PIKCQIYGWL TIQGTDGSAV RRKAITDYNL EGDGHISNPN GTGVSGLMDD RVKASSNQTK DLSDDRPLLA TEVESILKDL WEKEARFCML LCDFQQNLCV
0301: SEKRRGYEMF FLKSMLVPPN RFRPSTNSSL GIMEHPQNVM LSKVQEANLA LQHDNPNHMD ILTRWRDLQT SVNLFYDSSK GLVKSDKDGH GVRQLVDKKT
0401: GIVRQKIMGK RVNHSCRTVI SPDPFLAVNE IGIPPAAASK LTYPEKVTPW NAKNLRGAIR NGAEIHPGAT HYKVNNNLYK LQADHSKRHP TAKTLLASRG
0501: SISQPGKDPR CEFESKVVYR HIQDGDIVLV NRQPTLHKPS MMAHVVRVLP GEKTIRMHYA NCSTYNADFD GDEMNVHFPQ DEISRAEAIN IVDANKQYIG
0601: PRSGEAVRGL IQDHIVGAVL LTKVDTFLSR EEYSQLVYGS CVSSTRGPCQ SGKRVSIVND DDTLELLPPA FVKPERWTGK QVITTILNHL TKGHPPFTVE
0701: MKGKISVQYL TAKVRHVAEG EKLRDPEELV LYICHNELLK GMIDKNQFGN HGIIHTVHEL YGADTAGRLL SIFSRLFTLF LQFHGFTCGI DDLLLSQESN
0801: NERTDFLSKS EEHSEEAHKK FLCKKDVDTD LVELQMNIEK VVRRIGESAN VALDKAMLSE LNGLTTKVNK NMFPYGLQKP FPKNCLTLMT ATGAKGGDVN
0901: MTQISSLLGS QDLEGARVPR MISGKSLPCF PPWDSSSRAG GYVSDRFLTG LRPQEYYFHC MAGRNGLIDT AVKTSRSGYL QRCLIKSLES LFVSYDHSVR
1001: NVDGSIIQFC YGEDGVDVHK SSFLKKFKEL ADNRKAVSDR LARYKGELDI YNGDPLSFKS KYITKLPQVL TKSATKFHKE NKCCCRKLKK KCRCRYNIKE
1101: EELMKLLKVK YVASLVDPGE AVGVILAQSL GEPSTQMTLN TFHLAGRGDM NVTLGMPRIQ EILMKASANI GTPYMKCPVH EGKKRKDAAR LAEKLRGVTL
1201: ADVVEGIEVC TVPFHNSNGH ISSLYKLHLK LFSPDCYPPE SELTVDECQA SLRTVFVDAM EYAIEKHLNL LHKVSGIQET RVKDTENLPS EGPEESEGRP
1301: TDGDESDASD GDDENEDDLG ADAEKRKRQE NDEMEYEDDI ESEDGMNSDP DEETKHELDN EDDPAESGVE SEENDEGHLS DSSNKTAKLE GGLAATKLKK
1401: KRNETVENLK EQKQAHITQK RSKKLKLTVH VESADLNFEV HYILHKEPHI LLSQIAQKTL RSLFVSGSHN KNIGLCNVIW PEKKKKGETE TKQKETEREE
1501: AYRGLQTAGL DFEVFWDLQD FLNVCKLTSN DIHAMLRTYG VEAARATIIN EVKAVFEPFG IKVDPRHLSL AADYMTSGGS YRPMNSLGMA RFCTSPFGKM
1601: SFEQATRFIT EAAYHGEVDN LTGPSATVSL GKPAKTGTGA FGLMQNITLE ERAVM
0101: STCFTCRKFR LSAQLVDRYA RELELLARGD VVQAKNLQDS AVSEESVEMD EDGSVDKPAP PSDRGNKIWT SIQLKEAHSI FSKLMKKRVN KCANCGMKNP
0201: PIKCQIYGWL TIQGTDGSAV RRKAITDYNL EGDGHISNPN GTGVSGLMDD RVKASSNQTK DLSDDRPLLA TEVESILKDL WEKEARFCML LCDFQQNLCV
0301: SEKRRGYEMF FLKSMLVPPN RFRPSTNSSL GIMEHPQNVM LSKVQEANLA LQHDNPNHMD ILTRWRDLQT SVNLFYDSSK GLVKSDKDGH GVRQLVDKKT
0401: GIVRQKIMGK RVNHSCRTVI SPDPFLAVNE IGIPPAAASK LTYPEKVTPW NAKNLRGAIR NGAEIHPGAT HYKVNNNLYK LQADHSKRHP TAKTLLASRG
0501: SISQPGKDPR CEFESKVVYR HIQDGDIVLV NRQPTLHKPS MMAHVVRVLP GEKTIRMHYA NCSTYNADFD GDEMNVHFPQ DEISRAEAIN IVDANKQYIG
0601: PRSGEAVRGL IQDHIVGAVL LTKVDTFLSR EEYSQLVYGS CVSSTRGPCQ SGKRVSIVND DDTLELLPPA FVKPERWTGK QVITTILNHL TKGHPPFTVE
0701: MKGKISVQYL TAKVRHVAEG EKLRDPEELV LYICHNELLK GMIDKNQFGN HGIIHTVHEL YGADTAGRLL SIFSRLFTLF LQFHGFTCGI DDLLLSQESN
0801: NERTDFLSKS EEHSEEAHKK FLCKKDVDTD LVELQMNIEK VVRRIGESAN VALDKAMLSE LNGLTTKVNK NMFPYGLQKP FPKNCLTLMT ATGAKGGDVN
0901: MTQISSLLGS QDLEGARVPR MISGKSLPCF PPWDSSSRAG GYVSDRFLTG LRPQEYYFHC MAGRNGLIDT AVKTSRSGYL QRCLIKSLES LFVSYDHSVR
1001: NVDGSIIQFC YGEDGVDVHK SSFLKKFKEL ADNRKAVSDR LARYKGELDI YNGDPLSFKS KYITKLPQVL TKSATKFHKE NKCCCRKLKK KCRCRYNIKE
1101: EELMKLLKVK YVASLVDPGE AVGVILAQSL GEPSTQMTLN TFHLAGRGDM NVTLGMPRIQ EILMKASANI GTPYMKCPVH EGKKRKDAAR LAEKLRGVTL
1201: ADVVEGIEVC TVPFHNSNGH ISSLYKLHLK LFSPDCYPPE SELTVDECQA SLRTVFVDAM EYAIEKHLNL LHKVSGIQET RVKDTENLPS EGPEESEGRP
1301: TDGDESDASD GDDENEDDLG ADAEKRKRQE NDEMEYEDDI ESEDGMNSDP DEETKHELDN EDDPAESGVE SEENDEGHLS DSSNKTAKLE GGLAATKLKK
1401: KRNETVENLK EQKQAHITQK RSKKLKLTVH VESADLNFEV HYILHKEPHI LLSQIAQKTL RSLFVSGSHN KNIGLCNVIW PEKKKKGETE TKQKETEREE
1501: AYRGLQTAGL DFEVFWDLQD FLNVCKLTSN DIHAMLRTYG VEAARATIIN EVKAVFEPFG IKVDPRHLSL AADYMTSGGS YRPMNSLGMA RFCTSPFGKM
1601: SFEQATRFIT EAAYHGEVDN LTGPSATVSL GKPAKTGTGA FGLMQNITLE ERAVM
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.