Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- plastid 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P28430_001 | Banana | nucleus | 81.21 | 91.72 |
| Os06t0612200-01 | Rice | nucleus | 8.45 | 60.34 |
| Zm00001d029055_P010 | Maize | nucleus | 55.44 | 55.5 |
| KXG22455 | Sorghum | nucleus | 54.55 | 53.29 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 53.19 | 53.22 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 50.41 | 51.54 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 50.47 | 51.54 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 50.53 | 51.32 |
| KRH33046 | Soybean | nucleus | 49.47 | 50.7 |
| CDY06084 | Canola | nucleus | 45.57 | 50.69 |
| CDX72007 | Canola | nucleus | 45.69 | 50.36 |
| CDY65464 | Canola | nucleus | 27.78 | 50.16 |
| KRH71957 | Soybean | nucleus | 37.83 | 49.69 |
| CDX67702 | Canola | nucleus | 43.56 | 48.84 |
| Bra003294.1-P | Field mustard | nucleus | 45.57 | 48.8 |
| AT3G57660.1 | Thale cress | nucleus | 47.93 | 48.56 |
| Solyc10g080350.1.1 | Tomato | nucleus | 47.93 | 48.36 |
| Bra007345.1-P | Field mustard | nucleus | 46.63 | 48.11 |
| CDY65462 | Canola | nucleus | 10.11 | 47.77 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 49.88 | 47.47 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 21.34 | 25.64 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 6.91 | 24.43 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 21.69 | 23.15 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 14.18 | 21.39 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 12.35 | 14.58 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 12.35 | 12.49 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | InterPro:DNA-dir_RNA_pol1_lsu |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | EnsemblPlantsGene:GSMUA_Achr7G08010_001 | EnsemblPlants:GSMUA_Achr7P08010_001 | EnsemblPlants:GSMUA_Achr7T08010_001 | InterPro:IPR038120 | UniProt:M0TFP1 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000296449C | SEG:seg |
Description
Putative DNA-directed RNA polymerase I subunit rpa1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G08010_001]
Coordinates
chr7:-:5957632..5982792
Molecular Weight (calculated)
190251.0 Da
IEP (calculated)
8.145
GRAVY (calculated)
-0.271
Length
1692 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRLLDFLAAS GVVDSVYFSF YTSEEVRKIS VKKITKPDLL DAKNSPVPDG LYDPALGPLN DTDSCKSCGQ LSVCCPGHCG HIDLARPLYN PLLFKTLQGL
0101: LQITCFFCHK FKINEEKVKR YVALLDLIVK GDINGARSLE ANSWSEIFFP EEGTAESVTP SNFDKAKHLT WTSLQQSEAL SVLSKFMRER RKKCDNCGKK
0201: NPTIHSPIFG WLNKTTQGSD IRANFIIDSN LDLSSSEAKY SSLTQSRGES ASEMDEESPL PQKKVKEDKE LCDLPPEFIK QMSSSGQKHL LPSEVELILN
0301: NLWKNEANLC MLISGIHCKS SSISRGNKGC AMFFLKTLLV PPSKFRPAAR TSGRGVLEHP QNTLLSKVQQ ANIGLKNCII ADLDHPDILR RWMDLQKTVN
0401: VLFDGTKGFA KSDKEASGIR QLLEKKSGIL RQKMMGKRVN FACRSVISPD PYLAVNEIGI PPYFALRLTY PERVTPWNVN KLRCAIINGA NIHPGATHYK
0501: DKERMYKLQA SQTMRSAISR KLPTSRGMTA QLGMGPESEF EGKVVYRHLQ DGDIVLVNRQ PTLHKPSMMA HVVRVLKGEK TLRMHYANCS TYNADFDGDE
0601: MNVHLPQDEI SRAEAINIVN ANKQYIVPTS GHPIRGLIQD HIVSAVLLTK MDTFLTREEY HQLLYASCIQ PLPPAIWKPT PLWTGKQVIL HIMHIVITAI
0701: LNFVTRGHLP LTIEKRGRIQ KEYIGEDHTL LVLHIHNNDL VHGMIDKAQF GTYGLVHAVH ELYGPDVAGM LLSVFSRLFT SFLQMHGFTC GVDDLLLSQK
0801: SDMERKKILE KSETQAEEVH MRFTRTKDGD GDPMELQREI EKVLRGNGDS ATALLDRMMS NSLNSLTSEI NQTLFPNGLS KPFLKNCLSL MTTTGAKGGL
0901: VNMTQISSLL GQQELEGKRV PRMVSGKTLP CFPPWDISSR SGGFISDRFL TGLRPQEYYF HCMAGRDGLV DTAIKTSRSG YLQRCLIKNL ECLKVSYDHT
1001: VRDADGSVVQ FIYGEDGVDV LKTSYISEFK MLSDNRNVVL QKFSDQIVDT SLAKSNAYIR ELPCSLRDNA TDFVLKKQKS SPHQINKKDF MKLMKLKYLS
1101: SLAEPGEAVG VVAAQSVGEP STQMTVYKSQ VYKEFCQRPQ SCKSALLVVL FILCKKSCKF SLQSVNILFN NIFGYLFCTR RIGFIGDFFY LSLENNFFMI
1201: KESFLKCCVS NNDICNVLFL CSPSGLLYYI LFRRLNTFHL AGKGDMNVTL GIPRLQEILM TASKDIRTPL MNCPLHAWKT KDDAERLAAK LRRVSVADVV
1301: ERMEVCTVPF SIHRNQISTI YKLKMTLYPS ELYPSFSELT LEDCREVLEM TFVEAMEDAI AKHVDTISKI SDIKVENADG GDEDDESAGE HDEETQSGFE
1401: SEIDHLEADE DYLMGGGSPG VDMDLATPES PSKADSTPIS EDDKKKSKSV EKGKKETKSK AKKPKRSKKK IRRTIYVMAE GLKFEVHYIF RSEPRILLAE
1501: IAQRTAKRVY VKEYKNIERC SLKENKKSTD PFMLQIAGVN FKTLWDLEEY LDINHIYSND IHAMLNTYGV EAARATIIQE VTDVFGLYGI QVNIRHLSLI
1601: ADFMTFHGGY RPMNRVGMGD FNTSPFGKMT FETATKFIVE SAFHGEVDTL ESPSASVSLG QPVKMGTGCF DLMQNLQLFL DISSTKLTLI AS
0101: LQITCFFCHK FKINEEKVKR YVALLDLIVK GDINGARSLE ANSWSEIFFP EEGTAESVTP SNFDKAKHLT WTSLQQSEAL SVLSKFMRER RKKCDNCGKK
0201: NPTIHSPIFG WLNKTTQGSD IRANFIIDSN LDLSSSEAKY SSLTQSRGES ASEMDEESPL PQKKVKEDKE LCDLPPEFIK QMSSSGQKHL LPSEVELILN
0301: NLWKNEANLC MLISGIHCKS SSISRGNKGC AMFFLKTLLV PPSKFRPAAR TSGRGVLEHP QNTLLSKVQQ ANIGLKNCII ADLDHPDILR RWMDLQKTVN
0401: VLFDGTKGFA KSDKEASGIR QLLEKKSGIL RQKMMGKRVN FACRSVISPD PYLAVNEIGI PPYFALRLTY PERVTPWNVN KLRCAIINGA NIHPGATHYK
0501: DKERMYKLQA SQTMRSAISR KLPTSRGMTA QLGMGPESEF EGKVVYRHLQ DGDIVLVNRQ PTLHKPSMMA HVVRVLKGEK TLRMHYANCS TYNADFDGDE
0601: MNVHLPQDEI SRAEAINIVN ANKQYIVPTS GHPIRGLIQD HIVSAVLLTK MDTFLTREEY HQLLYASCIQ PLPPAIWKPT PLWTGKQVIL HIMHIVITAI
0701: LNFVTRGHLP LTIEKRGRIQ KEYIGEDHTL LVLHIHNNDL VHGMIDKAQF GTYGLVHAVH ELYGPDVAGM LLSVFSRLFT SFLQMHGFTC GVDDLLLSQK
0801: SDMERKKILE KSETQAEEVH MRFTRTKDGD GDPMELQREI EKVLRGNGDS ATALLDRMMS NSLNSLTSEI NQTLFPNGLS KPFLKNCLSL MTTTGAKGGL
0901: VNMTQISSLL GQQELEGKRV PRMVSGKTLP CFPPWDISSR SGGFISDRFL TGLRPQEYYF HCMAGRDGLV DTAIKTSRSG YLQRCLIKNL ECLKVSYDHT
1001: VRDADGSVVQ FIYGEDGVDV LKTSYISEFK MLSDNRNVVL QKFSDQIVDT SLAKSNAYIR ELPCSLRDNA TDFVLKKQKS SPHQINKKDF MKLMKLKYLS
1101: SLAEPGEAVG VVAAQSVGEP STQMTVYKSQ VYKEFCQRPQ SCKSALLVVL FILCKKSCKF SLQSVNILFN NIFGYLFCTR RIGFIGDFFY LSLENNFFMI
1201: KESFLKCCVS NNDICNVLFL CSPSGLLYYI LFRRLNTFHL AGKGDMNVTL GIPRLQEILM TASKDIRTPL MNCPLHAWKT KDDAERLAAK LRRVSVADVV
1301: ERMEVCTVPF SIHRNQISTI YKLKMTLYPS ELYPSFSELT LEDCREVLEM TFVEAMEDAI AKHVDTISKI SDIKVENADG GDEDDESAGE HDEETQSGFE
1401: SEIDHLEADE DYLMGGGSPG VDMDLATPES PSKADSTPIS EDDKKKSKSV EKGKKETKSK AKKPKRSKKK IRRTIYVMAE GLKFEVHYIF RSEPRILLAE
1501: IAQRTAKRVY VKEYKNIERC SLKENKKSTD PFMLQIAGVN FKTLWDLEEY LDINHIYSND IHAMLNTYGV EAARATIIQE VTDVFGLYGI QVNIRHLSLI
1601: ADFMTFHGGY RPMNRVGMGD FNTSPFGKMT FETATKFIVE SAFHGEVDTL ESPSASVSLG QPVKMGTGCF DLMQNLQLFL DISSTKLTLI AS
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.