Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 5
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.9 | 55.41 |
| Os09t0555200-01 | Rice | cytosol | 9.14 | 48.11 |
| Zm00001d031457_P009 | Maize | nucleus | 29.33 | 45.13 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 39.84 | 44.95 |
| Zm00001d031459_P001 | Maize | cytosol | 8.9 | 44.88 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 38.11 | 44.77 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 38.11 | 44.77 |
| Os04t0572600-01 | Rice | cytosol | 12.01 | 44.57 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 37.81 | 44.36 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 38.17 | 42.66 |
| Solyc08g080210.2.1 | Tomato | nucleus | 30.23 | 41.96 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 34.23 | 39.99 |
| KRH27976 | Soybean | nucleus | 32.86 | 37.83 |
| KRH77477 | Soybean | nucleus | 32.8 | 37.68 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 10.45 | 36.61 |
| CDY68589 | Canola | cytosol | 11.59 | 36.4 |
| CDX93859 | Canola | nucleus | 30.65 | 35.45 |
| Bra027611.1-P | Field mustard | nucleus | 30.53 | 35.41 |
| CDY49206 | Canola | nucleus | 30.76 | 35.27 |
| CDY32191 | Canola | nucleus | 30.29 | 35.11 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 30.29 | 34.89 |
| CDY50743 | Canola | nucleus | 15.83 | 32.48 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 15.59 | 18.21 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 10.87 | 16.22 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 13.56 | 16.12 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 12.37 | 13.82 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 12.84 | 13.56 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 12.49 | 12.35 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 2.81 | 9.81 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | MapMan:15.1.4.1 | MapMan:15.5.19 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:GO:0000418 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010495 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 | EnsemblPlantsGene:GSMUA_Achr8G12010_001 |
| EnsemblPlants:GSMUA_Achr8P12010_001 | EnsemblPlants:GSMUA_Achr8T12010_001 | InterPro:IPR017887 | InterPro:IPR038120 | UniProt:M0TPQ4 | PFAM:PF00623 |
| PFAM:PF03634 | PFAM:PF04983 | PFAM:PF05000 | PFAM:PF11523 | PFscan:PS51369 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf |
| SMART:SM00663 | SUPFAM:SSF64484 | InterPro:TF_TCP_subgr | TMHMM:TMhelix | InterPro:Transcription_factor_TCP | UniParc:UPI0002960615 |
| SEG:seg | : | : | : | : | : |
Description
RNA polymerase IV subunit, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12010_001]
Coordinates
chr8:+:8717529..8737122
Molecular Weight (calculated)
185104.0 Da
IEP (calculated)
6.773
GRAVY (calculated)
-0.107
Length
1674 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLKKILRVSR WPINIFIYVA NLKISRDIMT FVIVGVKMLL SVLSAIFLYY FIYYWLNINI FCFQVFCLLS ELDPEFIQQF VSRRELLFLS YLPITPNCQR
0101: VVETSHVFAD GPKLSFDERT RAYKRLADVS KKIGDTLLAA INFSKLYSGT AVVLFDHQSN LHASSSSRGD STSGIRWLKD VVLSKRTDNV FRMTMVGDPK
0201: IKLQEIGIPF DISESLIVAE QVNSYNLEKL NMSCNLHLLR KEGLNTRSKG QLTSLHKTNQ LQVGDIVSRP LENGDIILVN RPPSVHQHSL IALSVMILPI
0301: QSVISINPLC CAPLLGDFDG DCLHGYVPQS IGCRVELQEL LSLDHQLFNA QDGRSLVSLT HDSLTAAYLL TANREFLNKV DMQQLAMLCP FPMPPPAVVK
0401: TPKFQIPLWT GEQLFSMLLP PTMDFGVNSR NMISKGEVMA SLGGSFWLQN TTTGLFTTMF KHYGRKALDY LCCSQELLCE YLTLRGLSVS LGDVYLSSDS
0501: YSRLKMMDEI YFGLEEAEDA CQVMQLMLEP EMEILRNQNK DEDTLDCISQ YKIASERTCV SQVSIAAFKN VYHDLLSQIY QFINKDNSML EMIDAGSKGS
0601: LVKLIQQGAC LGLQLFAHPL PFTVPSKLNC CMWNNLKALD GGISDAAKSS CGQSSYAVIG TSFLDGLNPL ECFVHAICGR ANLFTENAEL PGTLTRKLMF
0701: YMRDLYLAYD GTVRSAYGQQ IVEFSYSILE DSTEGGESCV AYDGKDAEYT GLGGEPVGSW AACSISEAAY GSLEFPMNSL EYSPLMKLKM VLDCCKSNAS
0801: TNHTALLFLS KRLHGWRYGC EYGALEVKNH LERVCFFNLI ITVMILYDGH DVQGTNFSPW IMHFHVSKDK MLRRRLNVQL VKNELIKHYN CMRERMNPML
0901: PRLCFVSKNC SSAYKWKEHD DSFCMSVAAE TSESLIQLDT IRDMVIPLLL ETPIKGFWAS EKVEILCESL PGSGSELFLR VTMSKKCLPG SFWSDLQDAC
1001: IPIMDLIDWQ CSHPDNVYNI SGTYGIDAAW KYFVKSLKSV TADIGRDIHK RHLFMAADCL SVTGEFHGLS TKGLRQQRND MSISSPFAQA CLSNPVNCFV
1101: NAAKQGSMDH LSGTLDAVAW GKEAPSGTGG PFEIVYSGKV HNLTRGEGIY KNLHSIKAEL QQGDGEVCMA ANQTVPAKWK QQPKYSTNFD GAKETIDPQT
1201: SDEDHLKERI VSKFRTNCKG YNKQQQISAN DFLAKSHLTF GLRSKFSSES VSSWTDVVDM CSSLRTILYK YPIDGFLDEK DNSSLIEALN YHPKRAAKIG
1301: SGIQKIKVGC SPLHPGSRCF VLLRSDGSLE DFSYRKCVVG AAKLISPEFG SIRVRWGDME TQKRDEEVWQ RKATGGGGRS LSGVAVPSPG AIPVHRIIVP
1401: KPEPIEMLGV GAFQIVRRPA SRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIKWLLEHA EPAIIAATGT GTVPAIATNV GGTLKIPTEA
1501: PTSAPVSSTS TIDPLLPVGG AISISSGLAP IGPGAQGMMP MWTLGGDAAG ASMIPPGALW VLPPPSVAVA PSSQSQIWTF PRAPQIINLT AVRPVSTETR
1601: FTTTASGVNV ARAAEVQHSA APPVAAAYAP ATGGKQELQL MSNPGALRRG QVHELDDYED DEDDDDDDDS SAED
0101: VVETSHVFAD GPKLSFDERT RAYKRLADVS KKIGDTLLAA INFSKLYSGT AVVLFDHQSN LHASSSSRGD STSGIRWLKD VVLSKRTDNV FRMTMVGDPK
0201: IKLQEIGIPF DISESLIVAE QVNSYNLEKL NMSCNLHLLR KEGLNTRSKG QLTSLHKTNQ LQVGDIVSRP LENGDIILVN RPPSVHQHSL IALSVMILPI
0301: QSVISINPLC CAPLLGDFDG DCLHGYVPQS IGCRVELQEL LSLDHQLFNA QDGRSLVSLT HDSLTAAYLL TANREFLNKV DMQQLAMLCP FPMPPPAVVK
0401: TPKFQIPLWT GEQLFSMLLP PTMDFGVNSR NMISKGEVMA SLGGSFWLQN TTTGLFTTMF KHYGRKALDY LCCSQELLCE YLTLRGLSVS LGDVYLSSDS
0501: YSRLKMMDEI YFGLEEAEDA CQVMQLMLEP EMEILRNQNK DEDTLDCISQ YKIASERTCV SQVSIAAFKN VYHDLLSQIY QFINKDNSML EMIDAGSKGS
0601: LVKLIQQGAC LGLQLFAHPL PFTVPSKLNC CMWNNLKALD GGISDAAKSS CGQSSYAVIG TSFLDGLNPL ECFVHAICGR ANLFTENAEL PGTLTRKLMF
0701: YMRDLYLAYD GTVRSAYGQQ IVEFSYSILE DSTEGGESCV AYDGKDAEYT GLGGEPVGSW AACSISEAAY GSLEFPMNSL EYSPLMKLKM VLDCCKSNAS
0801: TNHTALLFLS KRLHGWRYGC EYGALEVKNH LERVCFFNLI ITVMILYDGH DVQGTNFSPW IMHFHVSKDK MLRRRLNVQL VKNELIKHYN CMRERMNPML
0901: PRLCFVSKNC SSAYKWKEHD DSFCMSVAAE TSESLIQLDT IRDMVIPLLL ETPIKGFWAS EKVEILCESL PGSGSELFLR VTMSKKCLPG SFWSDLQDAC
1001: IPIMDLIDWQ CSHPDNVYNI SGTYGIDAAW KYFVKSLKSV TADIGRDIHK RHLFMAADCL SVTGEFHGLS TKGLRQQRND MSISSPFAQA CLSNPVNCFV
1101: NAAKQGSMDH LSGTLDAVAW GKEAPSGTGG PFEIVYSGKV HNLTRGEGIY KNLHSIKAEL QQGDGEVCMA ANQTVPAKWK QQPKYSTNFD GAKETIDPQT
1201: SDEDHLKERI VSKFRTNCKG YNKQQQISAN DFLAKSHLTF GLRSKFSSES VSSWTDVVDM CSSLRTILYK YPIDGFLDEK DNSSLIEALN YHPKRAAKIG
1301: SGIQKIKVGC SPLHPGSRCF VLLRSDGSLE DFSYRKCVVG AAKLISPEFG SIRVRWGDME TQKRDEEVWQ RKATGGGGRS LSGVAVPSPG AIPVHRIIVP
1401: KPEPIEMLGV GAFQIVRRPA SRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIKWLLEHA EPAIIAATGT GTVPAIATNV GGTLKIPTEA
1501: PTSAPVSSTS TIDPLLPVGG AISISSGLAP IGPGAQGMMP MWTLGGDAAG ASMIPPGALW VLPPPSVAVA PSSQSQIWTF PRAPQIINLT AVRPVSTETR
1601: FTTTASGVNV ARAAEVQHSA APPVAAAYAP ATGGKQELQL MSNPGALRRG QVHELDDYED DEDDDDDDDS SAED
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.