Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027611.1-P | Field mustard | nucleus | 98.01 | 99.17 |
| CDY68589 | Canola | cytosol | 36.1 | 98.87 |
| CDY50743 | Canola | nucleus | 53.77 | 96.2 |
| CDX93859 | Canola | nucleus | 89.04 | 89.84 |
| CDY32191 | Canola | nucleus | 88.49 | 89.47 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 78.63 | 79.01 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 50.48 | 51.43 |
| KRH27976 | Soybean | nucleus | 48.22 | 48.42 |
| KRH77477 | Soybean | nucleus | 47.74 | 47.84 |
| Solyc08g080210.2.1 | Tomato | nucleus | 38.77 | 46.93 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 3.97 | 39.19 |
| Zm00001d031457_P009 | Maize | nucleus | 28.42 | 38.14 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 36.44 | 37.33 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 36.37 | 37.26 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 37.67 | 37.06 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 35.89 | 36.72 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 36.3 | 35.38 |
| Os09t0555200-01 | Rice | cytosol | 7.19 | 33.02 |
| Os04t0572600-01 | Rice | cytosol | 9.93 | 32.15 |
| Zm00001d031459_P001 | Maize | cytosol | 7.12 | 31.33 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 35.27 | 30.76 |
| CDY09230 | Canola | nucleus | 17.95 | 19.12 |
| CDY60335 | Canola | nucleus | 22.26 | 17.39 |
| CDY65462 | Canola | nucleus | 3.84 | 15.64 |
| CDY71816 | Canola | cytosol | 3.01 | 15.44 |
| CDX67702 | Canola | nucleus | 15.89 | 15.37 |
| CDY06084 | Canola | nucleus | 15.82 | 15.19 |
| CDX72007 | Canola | nucleus | 15.96 | 15.18 |
| CDY65464 | Canola | nucleus | 9.45 | 14.73 |
| CDY08876 | Canola | nucleus | 15.62 | 14.08 |
| CDX69166 | Canola | cytosol | 18.97 | 10.49 |
| CDX75527 | Canola | nucleus | 18.97 | 10.2 |
| CDY07630 | Canola | nucleus | 15.89 | 10.12 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:A0A078IGR2 | UniProt:A0A078IGR2 | EnsemblPlants:CDY49206 |
| ProteinID:CDY49206 | ProteinID:CDY49206.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlantsGene:GSBRNA2T00092571001 |
| InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF05000 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EEC37D | : |
Description
BnaA09g10720DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078IGR2]
Coordinates
chrLK032817:+:103364..109294
Molecular Weight (calculated)
163772.0 Da
IEP (calculated)
7.887
GRAVY (calculated)
-0.334
Length
1460 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEKCEELEV PMGTLKSISF SISNNKDRKN MSVMEVEAAN QVTDSRLGLP NRDDICKSCG SKDRKVCEGH FGVINLRYPV INPHLLKEVA TLLNKFCPGC
0101: KYTKKKQSQS QNPEDRPDRC RYCISNTDYP LMKFRVTTKE AFRRSGIVCE VSEDNVLKLS KRGLSALPPD YWDFMPKDPN IDESCLKPSR RILTHAQVYA
0201: LLSGIDERVI RKEIPMFDSL PLASFPVTPN GHRVSEMVTQ FTGPRLVFDE RTRIYKKLVG FEGNGLELSS RVMECMQYSR LFSENVSPSQ ESANPYQKKS
0301: DTPELRGLRF MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPRSIAERLQ VSENLNDWNR ERLVTSCFHK LLEKGETHVR RGGRLVGIRA IDDLQTGDSF
0401: LRTLKDGDTV LMNRPPSIHQ HSLIAMSVKV LPTTSVVSLN PICCLPFRGD FDGDCLHGYV PQSIQAKAEL EELVALDKQL VNRQNGRNLL SLGQDSLTAA
0501: YLVNVETNCF LNRAEMQQLQ MYCPYELPRP AIIRGSSTSS EPQWTGKQLF GMLFPPGFEY IYPLNNVVVT NGEVLSSSDG SGWLRDGEGN FIQGLMKHDK
0601: ERVLDIIYSA QEMLSQWLLN RGLSVSLADL YFASDRHSRR NLTEEISYGL QEAEQVCNKQ QLMVESRRDF LAVNGEEDTV VADDLELFCY ERQRSATLSK
0701: LAVSAFKDAY RDVQALAYRY GDQSNAFLVM SKAGSKGNMG KLAQHSMCIG LQNSSVALSF GFPRKLTCAS WNDPNSPLRG ARGEDRTAHE SFVPFGVVES
0801: SFLTGLNPLE SFVHSVTSRD SSFSGNADLP GTLSRKLMFF MRDIYAAYDG TVRNSFGNHL VQFRYESSDD AEEDMTGEAV GSLSACAITE AAYSALDQPI
0901: SLLETSPLLN LKNVLECGSK KGLKEQTMSL YLSETLSKKK HGFEYGALDI KRHLEKLCFS EIVSTSMIIF SPRTNTRMPM SSWVCHFHIS KKVLKQNQLD
1001: LESVVSSLNK QYANRKKELK LDVIDLDIQS KNHCSWDDKA MEDDRVCITV TVLEASRHDS LELDAIRLVL IPFLLDSPVK GYREIKKVDI LWVDRPKAPQ
1101: RNKKGLAGEL FLKVTMHGVR GKRSFWSALL ETCLPIMDMI DWTRSHPDNI RQCCSVYGID AGRSIFLADL ESAVSDTGKA MLREHLLLVA DSLSVTGEFV
1201: ALNPKGWSRQ RQAESTPAPF AQACFSSPSQ CFLKAAKEGV TDELEGSIDA LAWGKVPSFG TGDQFEIIIS PKNHGFSTPV VDVYGFLSRT ATLPKRKAVR
1301: ATSSSLPKSD EFTVQPFPLL DTAISKAVKT LDGKGLTRSQ LRMIFTWDDM EKLSRSLKRI LYNYEIDATL NELDGRLLMM ALLFHPNRDE KIGPGFKGIK
1401: VANSKHGNAR CFEVVRTDGT TEDFSYHKCV LGATEIIAPK RVNFYKAKYL RNGTVQPGAV
0101: KYTKKKQSQS QNPEDRPDRC RYCISNTDYP LMKFRVTTKE AFRRSGIVCE VSEDNVLKLS KRGLSALPPD YWDFMPKDPN IDESCLKPSR RILTHAQVYA
0201: LLSGIDERVI RKEIPMFDSL PLASFPVTPN GHRVSEMVTQ FTGPRLVFDE RTRIYKKLVG FEGNGLELSS RVMECMQYSR LFSENVSPSQ ESANPYQKKS
0301: DTPELRGLRF MKDVLLGKRS DHTFRTVVVG DPSLKLNEIG IPRSIAERLQ VSENLNDWNR ERLVTSCFHK LLEKGETHVR RGGRLVGIRA IDDLQTGDSF
0401: LRTLKDGDTV LMNRPPSIHQ HSLIAMSVKV LPTTSVVSLN PICCLPFRGD FDGDCLHGYV PQSIQAKAEL EELVALDKQL VNRQNGRNLL SLGQDSLTAA
0501: YLVNVETNCF LNRAEMQQLQ MYCPYELPRP AIIRGSSTSS EPQWTGKQLF GMLFPPGFEY IYPLNNVVVT NGEVLSSSDG SGWLRDGEGN FIQGLMKHDK
0601: ERVLDIIYSA QEMLSQWLLN RGLSVSLADL YFASDRHSRR NLTEEISYGL QEAEQVCNKQ QLMVESRRDF LAVNGEEDTV VADDLELFCY ERQRSATLSK
0701: LAVSAFKDAY RDVQALAYRY GDQSNAFLVM SKAGSKGNMG KLAQHSMCIG LQNSSVALSF GFPRKLTCAS WNDPNSPLRG ARGEDRTAHE SFVPFGVVES
0801: SFLTGLNPLE SFVHSVTSRD SSFSGNADLP GTLSRKLMFF MRDIYAAYDG TVRNSFGNHL VQFRYESSDD AEEDMTGEAV GSLSACAITE AAYSALDQPI
0901: SLLETSPLLN LKNVLECGSK KGLKEQTMSL YLSETLSKKK HGFEYGALDI KRHLEKLCFS EIVSTSMIIF SPRTNTRMPM SSWVCHFHIS KKVLKQNQLD
1001: LESVVSSLNK QYANRKKELK LDVIDLDIQS KNHCSWDDKA MEDDRVCITV TVLEASRHDS LELDAIRLVL IPFLLDSPVK GYREIKKVDI LWVDRPKAPQ
1101: RNKKGLAGEL FLKVTMHGVR GKRSFWSALL ETCLPIMDMI DWTRSHPDNI RQCCSVYGID AGRSIFLADL ESAVSDTGKA MLREHLLLVA DSLSVTGEFV
1201: ALNPKGWSRQ RQAESTPAPF AQACFSSPSQ CFLKAAKEGV TDELEGSIDA LAWGKVPSFG TGDQFEIIIS PKNHGFSTPV VDVYGFLSRT ATLPKRKAVR
1301: ATSSSLPKSD EFTVQPFPLL DTAISKAVKT LDGKGLTRSQ LRMIFTWDDM EKLSRSLKRI LYNYEIDATL NELDGRLLMM ALLFHPNRDE KIGPGFKGIK
1401: VANSKHGNAR CFEVVRTDGT TEDFSYHKCV LGATEIIAPK RVNFYKAKYL RNGTVQPGAV
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [cytosol,nucleus,plasma membrane]
SUBAcon: [cytosol,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.