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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY60335 Canola nucleus 50.22 61.58
Bra000162.1-P Field mustard nucleus 54.1 60.22
VIT_13s0067g03120.t01 Wine grape nucleus 23.73 54.62
AT2G40030.1 Thale cress nucleus 42.98 49.85
Solyc01g096390.2.1 Tomato nucleus 25.61 34.98
KRH20723 Soybean nucleus 27.01 30.64
KRH13386 Soybean nucleus 27.31 30.07
GSMUA_Achr3P05700_001 Banana nucleus 17.23 27.56
TraesCS6B01G094400.1 Wheat nucleus 18.46 26.55
TraesCS6B01G151900.1 Wheat nucleus 22.21 26.13
TraesCS6A01G123800.1 Wheat nucleus 22.21 26.0
TraesCS6D01G113900.1 Wheat nucleus 22.03 25.94
Zm00001d053872_P021 Maize nucleus 21.99 25.86
HORVU6Hr1G022890.1 Barley nucleus 22.08 25.66
OQU84386 Sorghum nucleus 22.03 25.06
CDY50743 Canola nucleus 7.64 21.45
CDY71816 Canola cytosol 2.23 17.89
CDY65462 Canola nucleus 2.62 16.76
CDY49206 Canola nucleus 10.12 15.89
CDX93859 Canola nucleus 9.99 15.83
CDY32191 Canola nucleus 9.9 15.72
CDY09230 Canola nucleus 7.59 12.7
CDY06084 Canola nucleus 8.2 12.36
CDX72007 Canola nucleus 8.2 12.25
CDX67702 Canola nucleus 8.03 12.19
CDY65464 Canola nucleus 4.32 10.57
CDY08876 Canola nucleus 7.37 10.44
CDX75527 Canola nucleus 9.38 7.92
CDX69166 Canola cytosol 8.81 7.65
CDY68589 Canola cytosol 0.96 4.13
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.20.120.1280MapMan:15.1.5.1Gene3D:2.40.40.20Gene3D:3.10.450.40
Gene3D:3.30.1490.180GO:A0A078EZV5UniProt:A0A078EZV5EnsemblPlants:CDY07630ProteinID:CDY07630ProteinID:CDY07630.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899
GO:GO:0005488GO:GO:0005575GO:GO:0006139GO:GO:0006351GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0016779
EnsemblPlantsGene:GSBRNA2T00124733001PFAM:PF00623PFAM:PF04983PFAM:PF04997PFAM:PF04998PFAM:PF11523
PANTHER:PTHR19376PANTHER:PTHR19376:SF36InterPro:RNA_pol_NInterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3InterPro:RNA_pol_Rpb1_5
InterPro:RNA_pol_asuSMART:SM00663SUPFAM:SSF64484TMHMM:TMhelixUniParc:UPI0004EE38F9SEG:seg
Description
BnaA03g18810DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078EZV5]
Coordinates
chrLK031980:-:167239..176154
Molecular Weight (calculated)
141453.0 Da
IEP (calculated)
6.797
GRAVY (calculated)
-0.261
Length
2292 amino acids
Sequence
(BLAST)
0001: MEEASSSDIL EAEIVGISFA LATHRQIRLA SISDAGINHA SQLSNAFLGL PLEFGKCEAC GATEPDKCEG HFGYIHLPVP IYHPAHVSEL KQMLSLLCLK
0101: CLKIKKIKST SSGLAERLLG VCCEEASNIT IKDKSSDGAS YLQLKLPSRT RLQEGFWNFL ERYGYRYGSD HTRPLLAREV KEILRRIPEE TRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEVSDGSNSM SVDPSRIELK DVLRKVVAIN NSRSGETNFE SHRAEANEMF RVVDTYLQVR GTAKPTRNID MRFGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAFRNVNEVG IPMEIAHRIT FEERVSVHNI GYLQELVDNK MCLSYTQGST TYSLRDGSKG HTVLKPGQIV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLTAKAEVL ELFSVDKQLR SSHTGQLILQ LGLDSLLSLR
0501: VMMEQVFLDK ASAQQLAMYG SRSLPPPAVV KSSKSGPAWT FFQILQLAFP ERLSCRGDGF IVGGSDLLSF DFGVDALASI INGIVTAIMV EKGPKEALAF
0601: FDSLQPLLME HLDPQGFSLS LEDLSMSRED MGVIHNLIVR EISPMVSRLR LSYEDELQLE NSIQKVKEVA ANFMLKSYSM RNLIDIKSNS AINKLVQQIG
0701: FLGLQLSDKK KLYTKTLVED MAQFYKKKYV STSSSGDFGI VKGCFFHGLD PYEEMAHSVA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSIVQFKY ELSSDNENQG LFEAGDPVGV LAATAMSNPA YKAVLDFXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRDKS KFETESGGAA WGSQAKNKSE IESGSGAAAW GTWDKKKSET ESGGGAWGSQ AKKNSETESG
1901: ACASTWGAWD KKKPETESGG DGAAWGSQAK NNSETESGSG AAAWGKKKPE TESGGGGAAW GSQAKNNSET ESGSGAAAWG KKKPETESGG GAAWGSQAKN
2001: NSETESGSGA AAWGKKKPET ESGGGAAWGS QAKNNSETES GSGAAAWGKK KPETESGGGG AAWGSQAKKN SESQLGAANW GSKDTNNSEN GSDSAAWGKK
2101: KNSEAEPTSV AWGSWGQPSP PASDKDAQED DGNPWVSLKA TNSGEKEGNE TSQWGVPNKR YPSAGSQSQG GGGGADWKRN RPPRTPGSES ILGPMFTATR
2201: QRVDMFTSEE QELLSDVDPV MRRLRKIMHQ SGYTDGEPIS DEDKTYVLEQ ILNYHPEKDA KLGPGLDFIT VKIAFTFIAS LLKALLSLIG LM
Best Arabidopsis Sequence Match ( AT2G40030.1 )
(BLAST)
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.