Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr9P05150_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40030.1 | GSMUA_Achr10P... | AT1G49590.1 | 23524848 |
| AT2G40030.1 | GSMUA_Achr9P05150_001 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 33.91 | 48.8 |
| Solyc01g096390.2.1 | Tomato | nucleus | 47.17 | 40.29 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 44.1 | 39.67 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 49.76 | 36.62 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 49.55 | 36.45 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 49.55 | 36.26 |
| Zm00001d053872_P021 | Maize | nucleus | 49.2 | 36.17 |
| OQU84386 | Sorghum | nucleus | 50.1 | 35.63 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 48.99 | 35.6 |
| KRH20723 | Soybean | nucleus | 47.1 | 33.42 |
| CDY60335 | Canola | nucleus | 42.78 | 32.8 |
| KRH13386 | Soybean | nucleus | 47.17 | 32.47 |
| AT2G40030.1 | Thale cress | nucleus | 44.24 | 32.09 |
| Bra000162.1-P | Field mustard | nucleus | 44.31 | 30.84 |
| CDY07630 | Canola | nucleus | 27.56 | 17.23 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 16.05 | 16.34 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 12.7 | 16.22 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 18.21 | 15.59 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 14.03 | 13.42 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 14.72 | 13.31 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.58 | 12.35 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 3.42 | 10.23 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.274.100 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSMUA_Achr3G05700_001 | EnsemblPlants:GSMUA_Achr3P05700_001 | EnsemblPlants:GSMUA_Achr3T05700_001 | UniProt:M0SC38 |
| PFAM:PF00623 | PFAM:PF04983 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0002950798 | SEG:seg | : |
Description
Putative RNA polymerase Rpb1, domain 2 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G05700_001]
Coordinates
chr3:+:3818210..3827165
Molecular Weight (calculated)
159067.0 Da
IEP (calculated)
7.079
GRAVY (calculated)
-0.269
Length
1433 amino acids
Sequence
(BLAST)
(BLAST)
0001: MERLPVPPNC LCVPEISDGK CVMSSDISKS LLKKILGKIE LIKRSRSGSP SFESYEVETN DLQSSIALYM NLRGTTKAPR DITRRFAFGN ETNEYLTKQW
0101: LDKIRTLFIR KGSGFSSRSV ISGDPYIGIN VVGLPSEIAK RITFEERVTE HNITRLQNVV DSRLCITYKD GSSTYAISVG SKGHTNLKIG QVINRQILDG
0201: DIVFINRPPS THKHSLQAFY VYIHDDHTVK INPLICAPLG ADFDGDCVHI FYPQSLSAKA EVLELFSVEK QLLSSHSGSL NLQLVQDASL ALKLIFKSGF
0301: IKKEVAQQLG MYVSSMLPPP AIVKATKCGP CWTILQVLQN VFPAFLDCSG ERYFIRESEI LELDTDQDVV QSLLTDIMTH IYHMKGPMEV LNFFNYIQPL
0401: LMEMLFMEGF SICLKDFILS KAVVSEIQGS IQKNSCILNQ LRSRRDERAE LQVQNHLRSM KDPIVKFILN SSALGNLIDS KSDSSMVKVV EQLGFLGLQL
0501: FDQGKYYSRA LVDDCFLNFV SKHSAGEVDH PSEAYGLVKN SFFHGLNPYE MLVHAISSRE VIVRSSRGLT EPGTLFKNLM AILRDVVICY DGSVRNVCTG
0601: SLVQLEYVDD EGVNSVNTPP AGDPVGVLAA TAISNLAYKA VLDSSQSNNS SWELMKEILL CKVSYKNDVS DRRVILYLND CCCQKRFCKE NAAFTVLNCL
0701: KRVTLKDCAH EFLIEYQKQI GVCDSSVTTS GLVGHIHLDK MQLKLLNINP DDILHKCQAV IFSYGKKKGQ LSHFFRRIFL STCKCCSIKQ PSDGNLCHLP
0801: CLQFSYADAN ASQNNISLER AIHVMSETIC PILLDTIVKG DPRVHEVKIV WIGPDATSWV GSSCKTLKGD LGLEVVLGQD AVRQSGDAWR TVLDACLPVM
0901: HLIDTGRSIP YGIQQIQEVL GISCAFDQAV QRLSKSIKMV SKGVMKEHLL LVANSMTCTG KLIGFNTGGY KALFRSFKVE VPFTAATLFT PMKCFERAAE
1001: KCQVDSLASV VSSCSWGKNV AIGTGAPFQI LWDKKQMAMN KDIGKGVYDF LELLRETSSG EATGRYLADV DELAEENGIC LSPDLDGCMT FDDSDDVEYN
1101: FQKRIGVVNG KSGESSWEVD PVSVKSGNWE GWGDKESTHV DNCESPATKH NVWSSWDSIQ VKQKTVESEN LAGDTVPGED MDAQKHSGTA DESVAWGKWK
1201: ADGNSTARDK LSHRNCWNEA SKTKVDLKEG SPVWNRTASS PKSKHNQDSL FSTPGTWSSQ SSGKPWGQDN ANNTKRNIAQ DGWRCAESPV TNIWDSTSTR
1301: NANVSDSQWS GNPSKNLDIQ WDGNDSNKDL DSQWCGNVTS TSNTSEGRNQ SWNSRGWGSA NPPGRKNQKT FSARFPGKSA SQKGWNSNRA LASGRRLESL
1401: TAEEEKILAE VEPVMLTIKR ILHDSRQMLL FIL
0101: LDKIRTLFIR KGSGFSSRSV ISGDPYIGIN VVGLPSEIAK RITFEERVTE HNITRLQNVV DSRLCITYKD GSSTYAISVG SKGHTNLKIG QVINRQILDG
0201: DIVFINRPPS THKHSLQAFY VYIHDDHTVK INPLICAPLG ADFDGDCVHI FYPQSLSAKA EVLELFSVEK QLLSSHSGSL NLQLVQDASL ALKLIFKSGF
0301: IKKEVAQQLG MYVSSMLPPP AIVKATKCGP CWTILQVLQN VFPAFLDCSG ERYFIRESEI LELDTDQDVV QSLLTDIMTH IYHMKGPMEV LNFFNYIQPL
0401: LMEMLFMEGF SICLKDFILS KAVVSEIQGS IQKNSCILNQ LRSRRDERAE LQVQNHLRSM KDPIVKFILN SSALGNLIDS KSDSSMVKVV EQLGFLGLQL
0501: FDQGKYYSRA LVDDCFLNFV SKHSAGEVDH PSEAYGLVKN SFFHGLNPYE MLVHAISSRE VIVRSSRGLT EPGTLFKNLM AILRDVVICY DGSVRNVCTG
0601: SLVQLEYVDD EGVNSVNTPP AGDPVGVLAA TAISNLAYKA VLDSSQSNNS SWELMKEILL CKVSYKNDVS DRRVILYLND CCCQKRFCKE NAAFTVLNCL
0701: KRVTLKDCAH EFLIEYQKQI GVCDSSVTTS GLVGHIHLDK MQLKLLNINP DDILHKCQAV IFSYGKKKGQ LSHFFRRIFL STCKCCSIKQ PSDGNLCHLP
0801: CLQFSYADAN ASQNNISLER AIHVMSETIC PILLDTIVKG DPRVHEVKIV WIGPDATSWV GSSCKTLKGD LGLEVVLGQD AVRQSGDAWR TVLDACLPVM
0901: HLIDTGRSIP YGIQQIQEVL GISCAFDQAV QRLSKSIKMV SKGVMKEHLL LVANSMTCTG KLIGFNTGGY KALFRSFKVE VPFTAATLFT PMKCFERAAE
1001: KCQVDSLASV VSSCSWGKNV AIGTGAPFQI LWDKKQMAMN KDIGKGVYDF LELLRETSSG EATGRYLADV DELAEENGIC LSPDLDGCMT FDDSDDVEYN
1101: FQKRIGVVNG KSGESSWEVD PVSVKSGNWE GWGDKESTHV DNCESPATKH NVWSSWDSIQ VKQKTVESEN LAGDTVPGED MDAQKHSGTA DESVAWGKWK
1201: ADGNSTARDK LSHRNCWNEA SKTKVDLKEG SPVWNRTASS PKSKHNQDSL FSTPGTWSSQ SSGKPWGQDN ANNTKRNIAQ DGWRCAESPV TNIWDSTSTR
1301: NANVSDSQWS GNPSKNLDIQ WDGNDSNKDL DSQWCGNVTS TSNTSEGRNQ SWNSRGWGSA NPPGRKNQKT FSARFPGKSA SQKGWNSNRA LASGRRLESL
1401: TAEEEKILAE VEPVMLTIKR ILHDSRQMLL FIL
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.