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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra018814.1-P
Bra034318.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY60335 Canola nucleus 89.46 98.56
AT2G40030.1 Thale cress nucleus 74.45 77.58
VIT_13s0067g03120.t01 Wine grape nucleus 30.89 63.86
CDY07630 Canola nucleus 60.22 54.1
Solyc01g096390.2.1 Tomato nucleus 43.42 53.28
KRH20723 Soybean nucleus 44.54 45.4
GSMUA_Achr3P05700_001 Banana nucleus 30.84 44.31
KRH13386 Soybean nucleus 44.73 44.24
TraesCS6B01G094400.1 Wheat nucleus 31.33 40.49
Zm00001d053872_P021 Maize nucleus 36.67 38.74
TraesCS6A01G123800.1 Wheat nucleus 36.57 38.46
TraesCS6B01G151900.1 Wheat nucleus 36.38 38.45
TraesCS6D01G113900.1 Wheat nucleus 36.33 38.42
HORVU6Hr1G022890.1 Barley nucleus 36.28 37.88
OQU84386 Sorghum nucleus 37.01 37.82
Bra027611.1-P Field mustard nucleus 15.78 22.52
Bra041010.1-P Field mustard cytosol, plastid 5.05 21.76
Bra020267.1-P Field mustard nucleus 11.32 17.01
Bra010510.1-P Field mustard nucleus 14.38 16.23
Bra003294.1-P Field mustard nucleus 11.95 15.57
Bra007345.1-P Field mustard nucleus 12.04 15.12
Bra011638.1-P Field mustard nucleus 14.28 10.85
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.20.120.1280MapMan:15.1.5.1Gene3D:2.40.40.20Gene3D:3.10.450.40
Gene3D:3.30.1490.180EnsemblPlantsGene:Bra000162EnsemblPlants:Bra000162.1EnsemblPlants:Bra000162.1-Pncoils:CoilGO:GO:0000419
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005730
GO:GO:0006139GO:GO:0006259GO:GO:0006306GO:GO:0006351GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009987GO:GO:0016604
GO:GO:0016740GO:GO:0016779GO:GO:0030422GO:GO:0035194GO:GO:0040029GO:GO:0050832
UniProt:M4C7I4PFAM:PF00623PFAM:PF04983PFAM:PF04997PFAM:PF04998PFAM:PF11523
PANTHER:PTHR19376PANTHER:PTHR19376:SF36InterPro:RNA_pol_NInterPro:RNA_pol_Rpb1_1InterPro:RNA_pol_Rpb1_3InterPro:RNA_pol_Rpb1_5
InterPro:RNA_pol_asuSMART:SM00663SUPFAM:SSF64484UniParc:UPI0002540257SEG:seg:
Description
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase
Coordinates
chrA03:+:9641886..9650204
Molecular Weight (calculated)
225602.0 Da
IEP (calculated)
5.505
GRAVY (calculated)
-0.601
Length
2059 amino acids
Sequence
(BLAST)
0001: MEEASSSDIL EAEIVGISFA LATHRQIRLA SISDAGINHA SQLSNAFLGL PLEFGKCEAC GATEPDKCEG HFGYIHLPVP IYHPAHVSEL KQMLSLLCLK
0101: CLKIKKIKST SSGLAERLLG VCCEEASNIT IKDKSSDGAS YLQLKLPSRT RLQEGFWNFL ERYGYRYGSD HTRPLLAREV KEILRRIPEE TRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEVSDGSNSM SVDPSRIELK DVLRKVVAIN NSRSGETNFE SHRAEANEMF RVVDTYLQVR GTAKPTRNID MRFGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAFRNVNEVG IPMEIAHRIT FEERVSVHNI GYLQELVDNK MCLSYTQGST TYSLRDGSKG HTVLKPGQIV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLTAKAEVL ELFSVDKQLR SSHTGQLILQ LGLDSLLSLR
0501: VMMEQVFLDK ASAQQLAMYG SRSLPPPAVV KSSKSGPAWT FFQILQLAFP ERLSCRGDGF IVGGSDLLSF DFGVDALASI INGIVTAIMV EKGPKEALAF
0601: FDSLQPLLME HLDPQGFSLS LEDLSMSRED MGVIHNLIVR EISPMVSRLR LSYEDELQLE NSIQKVKEVA ANFMLKSYSM RNLIDIKSNS AINKLVQQIG
0701: FLGLQLSDKK KLYTKTLVED MAQFYKKKYV STSSSGDFGI VKGCFFHGLD PYEEMAHSVA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSIVQFKY ELSSDNENQG LFEAGDPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECRCGKKY CQENSAYTVR
0901: NKLKKVSLKD TAVEFLVEYR KQQAISEIFG MDICLHGHIH LNKTLLEGWN ISMQDILQRC EDAINSLVQK KKKKAEDFKK MNLSVSECCS FRGPGSSKDS
1001: DMPCLMFSSY NATDPDLERT LDVLCNTIYP VLLETVIKGD PRIASANIIW NSPETTTWIR SRHASRRGEW VLDVTVEKSD VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SIKQVQELLG LSCAFEQAVQ RLSASVRKVS KGVLKEHIIL VANNMTCSGD MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHKDSLSTVV GSCSWGKRVD VGTGSQFELL WNKKETGLEN DDETDVFSFL QMVRSTKTAD AYVSSPGFDV TEEEMAEWAE SPERDSALGE PKFDDSAEFQ
1301: NLLDEGKASE SKWDNGSLWE NGCSSGSEWG VSKNAGGEEN TQSGWGKAAN IEKEDASSGW NSKKDAQEAT NTDSWGAWGS KTKDDAENAT PNWGTKPAQN
1401: DSVVIENGEP SSDVWGPKAV SDKPWGKKNS ETEPAPAAWG KTNSESESAA AAWGSTNKKN TGTESDAAGW GSTNKKNPET ESDAGAWGSG AKNKETEPAP
1501: AAWGSWGKKS SEAVSGGADW GNRGKRVSET ESGAGGWASR NPSLETQSGG ATWGSRDKSK FETESGGAAW GSQAKNNFES ESGSGAAAWG KKKPETESGG
1601: AAWGSQAKNK SEIESGSGAA AWGTWDKKKS ETESGGGAWG SQAKKNSETE SGAGASTWGA WDKKKPETES GGDGAAWGSQ AKNNSETESG SGAAAWGKKK
1701: PETESGGGAA WGSQAKKNSE SQLGAANWGS KDTNNSENGS DSAAWGKKKN SEAEPTSVAW GSWGQPSPPA SDKDAQEDDG NPWVSLKATN SGEKEGNETS
1801: QWGVPNKRYP SAGSQSQGGG GGADWKRNRP PRTPGSESIM GPMFTATRQR VDMFTSEEQE LLSDVDPVMR RLRKIMHQSG YTDGEPISDE DKTYVLEQIL
1901: NYHPEKDAKL GPGLDFITVD KHTTFTESRC FFVVSTDGTK QDFSYRKCIN NYLVEKFPNL AEEFIAKYFR KRDNENRDKN SQEATPPGEK ESQTQPIDNG
2001: SQDSQPQSIG NEDGDTQPQS QAEDTQPQSQ IEDTQLQSQV EESQPIGNGG EDYQTEPQG
Best Arabidopsis Sequence Match ( AT2G40030.1 )
(BLAST)
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.