Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09230 | Canola | nucleus | 100.0 | 100.0 |
| AT5G60040.2 | Thale cress | cytosol | 86.35 | 85.05 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 10.95 | 69.12 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 11.09 | 66.67 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 49.93 | 63.75 |
| Solyc11g072730.1.1 | Tomato | nucleus | 64.09 | 63.17 |
| KRG88695 | Soybean | nucleus | 63.07 | 62.11 |
| Os04t0492300-01 | Rice | nucleus | 61.02 | 60.45 |
| EES11045 | Sorghum | nucleus | 61.17 | 60.24 |
| Zm00001d003203_P003 | Maize | cytosol | 61.02 | 59.97 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 59.42 | 58.35 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 29.49 | 58.3 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 59.34 | 58.28 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 59.34 | 58.28 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 59.85 | 57.54 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 58.61 | 57.44 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 31.68 | 56.88 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 29.49 | 56.35 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 29.56 | 56.33 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 6.06 | 56.08 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 61.24 | 52.93 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 5.69 | 52.7 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 6.13 | 52.17 |
| Bra003294.1-P | Field mustard | nucleus | 28.18 | 24.43 |
| Bra010510.1-P | Field mustard | nucleus | 32.19 | 24.18 |
| Bra007345.1-P | Field mustard | nucleus | 28.03 | 23.41 |
| Bra027611.1-P | Field mustard | nucleus | 18.98 | 18.02 |
| Bra011638.1-P | Field mustard | nucleus | 31.75 | 16.06 |
| Bra000162.1-P | Field mustard | nucleus | 17.01 | 11.32 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 3.43 | 9.83 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | EnsemblPlantsGene:Bra020267 | EnsemblPlants:Bra020267.1 |
| EnsemblPlants:Bra020267.1-P | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | UniProt:M4DUS4 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 |
| InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI00025435E9 |
| SEG:seg | : | : | : | : | : |
Description
AT5G60040 (E=0.0) NRPC1 | NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding
Coordinates
chrA02:-:5935221..5943358
Molecular Weight (calculated)
152523.0 Da
IEP (calculated)
8.765
GRAVY (calculated)
-0.269
Length
1370 amino acids
Sequence
(BLAST)
(BLAST)
0001: METKTEIEFT KEPYIEDVGP LKIQSINFSM LSDIEVMKAA EVQVWKNMYY ESNFKPIEGG LLDPRMGPPN KRSTCATCHG NFQNCPGHYG YLKLDLPVYN
0101: VGFFNFILDI LKCICKSCSS MLIEEKMYED HLKKMRNPRT EPLRKTELAK AVVKKCSLMA GQRVITCKKC GYLNGMVKKV AAQLGIGISH DRSKIHGGEI
0201: DEFKSAISHT KESAGGINPL TYVLDPNVVL RLFKGMSDKD CELLYIAHRP ENLIITCMLV PPLSIRPSVM IGGTQSNEND ITERLKKIIQ DNASLHKILS
0301: QPTTSPKNMQ VWDTVQSEVA QYINSEVRGV QIMPNTKPLA GLLQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMARI LTFPECVSRH
0401: NIDKLRQRVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELTYGCIV DRHLEDGDAI LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEMLVA STQDFLTSAY LITRKDTFYD RAAFSLICSY MGDAMDSIDL PTPTIFKPIE LWTGKQVFNV
0601: LLRPNASVRV YVTLNVKEKN FRKGEHYDET MCINDGWVYF RNSELISGQL GKATLGNGSK DGLYSILLRD YNSHAAAVCM NRLAKLSARW IGIHGFSIGI
0701: DDVQPGKKLK EDREVIVKRR YKDCDELLKN YEKGDLDAAK TLEANLTGFL NKIREETGKL CMDGLHWRNS PLIMSQCGSK GSPINISQMV TCVGQQTVNG
0801: SRAPDGFIDR SLPHFPRMSR TPEAKGFVAN SFYDGLSATE FFFHTMGGRE GLVDTAVKTA STGYMSRRLM KALEDLLVHY DNTVRNASGS ILQFTYGDDG
0901: MDPALMEGKN GTPLNFDRLF LKIQATCPPR SHHNYLSSDE LLQKFEEELV RQDTSRVCTD AFVKSLREFV CLLGVKSASP SQIFSKGSGV TDKQLEVFVK
1001: ICVSRYRGKT IEPGTAIGPI GAQSIGEPGT QMTLKTFHFA GVASMNITQG VPRINEIINA TKTISTPVIS AELENPLVEA SARMAKGRIE KTTLGQVAES
1101: IEVLMTSTSA SVRITLDKKI IEEAFLSITP WSVKNSILKT RIKLQDENIR VLDTGLDIIP KGDQNGTHFT LHNLKNVLPN VIVNGIKTVE RVVIAEDTDK
1201: KKEIGGKKRL KLFVEGTNLL DVMGTPGIDG RTTTSNNIVE VSKTLGIEAA RTTIIDEIGS VMGNHGMSID IRHMMLLADV MTYRGEVLGI QRTGIQKMDK
1301: SVLMQASFER TGDHLFSAAI SGKVDNIEGV TECVIMGIPM KLGTGILKVL QKTKTEDLPK LNYGADPIIS
0101: VGFFNFILDI LKCICKSCSS MLIEEKMYED HLKKMRNPRT EPLRKTELAK AVVKKCSLMA GQRVITCKKC GYLNGMVKKV AAQLGIGISH DRSKIHGGEI
0201: DEFKSAISHT KESAGGINPL TYVLDPNVVL RLFKGMSDKD CELLYIAHRP ENLIITCMLV PPLSIRPSVM IGGTQSNEND ITERLKKIIQ DNASLHKILS
0301: QPTTSPKNMQ VWDTVQSEVA QYINSEVRGV QIMPNTKPLA GLLQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMARI LTFPECVSRH
0401: NIDKLRQRVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELTYGCIV DRHLEDGDAI LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEMLVA STQDFLTSAY LITRKDTFYD RAAFSLICSY MGDAMDSIDL PTPTIFKPIE LWTGKQVFNV
0601: LLRPNASVRV YVTLNVKEKN FRKGEHYDET MCINDGWVYF RNSELISGQL GKATLGNGSK DGLYSILLRD YNSHAAAVCM NRLAKLSARW IGIHGFSIGI
0701: DDVQPGKKLK EDREVIVKRR YKDCDELLKN YEKGDLDAAK TLEANLTGFL NKIREETGKL CMDGLHWRNS PLIMSQCGSK GSPINISQMV TCVGQQTVNG
0801: SRAPDGFIDR SLPHFPRMSR TPEAKGFVAN SFYDGLSATE FFFHTMGGRE GLVDTAVKTA STGYMSRRLM KALEDLLVHY DNTVRNASGS ILQFTYGDDG
0901: MDPALMEGKN GTPLNFDRLF LKIQATCPPR SHHNYLSSDE LLQKFEEELV RQDTSRVCTD AFVKSLREFV CLLGVKSASP SQIFSKGSGV TDKQLEVFVK
1001: ICVSRYRGKT IEPGTAIGPI GAQSIGEPGT QMTLKTFHFA GVASMNITQG VPRINEIINA TKTISTPVIS AELENPLVEA SARMAKGRIE KTTLGQVAES
1101: IEVLMTSTSA SVRITLDKKI IEEAFLSITP WSVKNSILKT RIKLQDENIR VLDTGLDIIP KGDQNGTHFT LHNLKNVLPN VIVNGIKTVE RVVIAEDTDK
1201: KKEIGGKKRL KLFVEGTNLL DVMGTPGIDG RTTTSNNIVE VSKTLGIEAA RTTIIDEIGS VMGNHGMSID IRHMMLLADV MTYRGEVLGI QRTGIQKMDK
1301: SVLMQASFER TGDHLFSAAI SGKVDNIEGV TECVIMGIPM KLGTGILKVL QKTKTEDLPK LNYGADPIIS
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.