Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 11.29 | 72.35 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 11.43 | 69.74 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 52.19 | 67.66 |
| Solyc11g072730.1.1 | Tomato | nucleus | 65.85 | 65.9 |
| Bra020267.1-P | Field mustard | nucleus | 62.11 | 63.07 |
| CDY09230 | Canola | nucleus | 62.11 | 63.07 |
| Os04t0492300-01 | Rice | nucleus | 62.33 | 62.69 |
| AT5G60040.2 | Thale cress | cytosol | 62.26 | 62.26 |
| Zm00001d003203_P003 | Maize | cytosol | 62.26 | 62.12 |
| EES11045 | Sorghum | nucleus | 61.9 | 61.9 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 61.47 | 61.29 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 61.39 | 61.22 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 61.39 | 61.22 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 30.05 | 60.32 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 61.75 | 60.28 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 32.64 | 59.5 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 59.74 | 59.44 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 29.98 | 58.16 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 30.05 | 58.14 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 5.82 | 54.73 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 62.11 | 54.51 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 5.39 | 50.68 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 5.82 | 50.31 |
| KRH40807 | Soybean | nucleus | 32.78 | 25.73 |
| KRH76591 | Soybean | nucleus | 32.93 | 25.07 |
| KRH28855 | Soybean | nucleus | 32.71 | 24.9 |
| KRH33046 | Soybean | nucleus | 26.82 | 22.59 |
| KRH71957 | Soybean | nucleus | 20.78 | 22.44 |
| KRH27976 | Soybean | nucleus | 19.41 | 18.57 |
| KRH77477 | Soybean | nucleus | 18.91 | 18.05 |
| KRH20723 | Soybean | nucleus | 17.54 | 12.08 |
| KRH13386 | Soybean | nucleus | 17.54 | 11.72 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| EntrezGene:100811292 | MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | EnsemblPlantsGene:GLYMA_U034000 |
| GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005666 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | UniProt:I1LK95 | InterPro:IPR038120 |
| EnsemblPlants:KRG88695 | ProteinID:KRG88695 | ProteinID:KRG88695.1 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 | InterPro:RNAP_III_RPC1_N | InterPro:RNAP_III_Rpc1_C |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000233C9E0 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chrscaffold_32:+:140723..170103
Molecular Weight (calculated)
155783.0 Da
IEP (calculated)
9.375
GRAVY (calculated)
-0.293
Length
1391 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNRARTEGIT FTKEPFMEDT GPRKIKNMKF STLSESEISK IAEVQVWKGS YYDSFKKPIH GGLLDPRMGP ANKSLVCATC DGNFHDCPGH YGYLNLALPV
0101: FNVGYLSTIV EILKCICKGC ARILLDEDTR KKHLKKMRSS KKSELDKIDF VKVRVIKDCS KVVNCPRCGY INGSVKKLPA SLTIIHDCSK CRNYIVEELD
0201: SALSRMKDSR ATTNVSNRIL NPFQVLSLFK RMLDEDCELL YVAERPEKLI MTNVVVPPIA IRPSVVMDES LSNENDITER LKNIIQANAV LRQELQESTF
0301: SSKFLDGWDI LQNEVAQFIN SDVRGIPFYM QPTKQLAGFV QRLKGKHGRF RGNLSGKRVE YTGRTVISPD PNLKISEVAI PIHMARILTY PERVTHHNIE
0401: KLRQCVRNGP DKYPGARMLR RDGGHSWSLK VLCRKRAADE LRIGDIVDRH LEDGDIVLFN RQPSLHRMSI MCHRARIMPW RTLRFNESVC NPYNADFDGD
0501: EMNLHVPQTE EARTEAILLM GVENNLCTPK NGEILVASTQ DFLTSSFLIT RKDTFYDRST FSLICSYIGD GMDPIDLPTP AIVKPVELWS GKQLFSIILR
0601: PHANMRVYVN LTVKERNYTE DKKIKDKKIE WKTLCPNDGF VYFRNSELIS GQVGKVTLGN GNKDGLFSVL LRDYRAHAAA SCMNRLAKLS ARWIGNHGFS
0701: IGIDDVQPKE ILINKKDETI SEGYRECDKH IEAFNKGKLE LLAGCDAAQT LETRITGVLN GLRDTAGKVC MQTLHWRNSP LIMSQCGSKG SSINISQMVA
0801: CVGQQSVGGR RTPNGFIDRS LPHFPRKSKT PAAKGFVANS FYSGLSATEF FFHTMGGREG LVDTAVKTAD TGYMSRQLMK SLEDLFLHYD YTVRNAGGSI
0901: VQFCYGDDGM DPAGMEGKNG KPLNFERLFL KSKAICPNDE DDEILSSSDV SKVVHEKLSE FDMSRLAEKG VFEVGFSADF VESLQSFIKD NAKLTEEGFT
1001: DEHSQNLKKF GQRISGITRK QLDVFLNICL SRYHSKKMEA GAPVGATGAH SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR VKEIMNGNKK ISTPIITAIL
1101: ERDDNANTAR IVKGRIEKTN LGQVAKSIKV VMTSRSASVV ITLDMKRIQD AHLNIDANIV KESILRTKKT KLKPEHIKIL DIKKLEVVPQ DVDRSKIHFQ
1201: LHYLKNLLPT VVVKGIKTVD RVVISKDTKA EKFRLLVEGT GFREVMGVEG IDGRKTVSNH IHEVRDTLGI EAARESIVKE IKYTMVDTHG MNIDIRHMML
1301: LADMMTATGH ILGINRFGIS KMGKSVLMLA SFERTADILF QASVRGRDDS IGGVSESIIM GIPIQIGTGM IKVKQRLDPP ELPHGTSPIL S
0101: FNVGYLSTIV EILKCICKGC ARILLDEDTR KKHLKKMRSS KKSELDKIDF VKVRVIKDCS KVVNCPRCGY INGSVKKLPA SLTIIHDCSK CRNYIVEELD
0201: SALSRMKDSR ATTNVSNRIL NPFQVLSLFK RMLDEDCELL YVAERPEKLI MTNVVVPPIA IRPSVVMDES LSNENDITER LKNIIQANAV LRQELQESTF
0301: SSKFLDGWDI LQNEVAQFIN SDVRGIPFYM QPTKQLAGFV QRLKGKHGRF RGNLSGKRVE YTGRTVISPD PNLKISEVAI PIHMARILTY PERVTHHNIE
0401: KLRQCVRNGP DKYPGARMLR RDGGHSWSLK VLCRKRAADE LRIGDIVDRH LEDGDIVLFN RQPSLHRMSI MCHRARIMPW RTLRFNESVC NPYNADFDGD
0501: EMNLHVPQTE EARTEAILLM GVENNLCTPK NGEILVASTQ DFLTSSFLIT RKDTFYDRST FSLICSYIGD GMDPIDLPTP AIVKPVELWS GKQLFSIILR
0601: PHANMRVYVN LTVKERNYTE DKKIKDKKIE WKTLCPNDGF VYFRNSELIS GQVGKVTLGN GNKDGLFSVL LRDYRAHAAA SCMNRLAKLS ARWIGNHGFS
0701: IGIDDVQPKE ILINKKDETI SEGYRECDKH IEAFNKGKLE LLAGCDAAQT LETRITGVLN GLRDTAGKVC MQTLHWRNSP LIMSQCGSKG SSINISQMVA
0801: CVGQQSVGGR RTPNGFIDRS LPHFPRKSKT PAAKGFVANS FYSGLSATEF FFHTMGGREG LVDTAVKTAD TGYMSRQLMK SLEDLFLHYD YTVRNAGGSI
0901: VQFCYGDDGM DPAGMEGKNG KPLNFERLFL KSKAICPNDE DDEILSSSDV SKVVHEKLSE FDMSRLAEKG VFEVGFSADF VESLQSFIKD NAKLTEEGFT
1001: DEHSQNLKKF GQRISGITRK QLDVFLNICL SRYHSKKMEA GAPVGATGAH SIGEPGTQMT LKTFHFAGVA SMNVTLGVPR VKEIMNGNKK ISTPIITAIL
1101: ERDDNANTAR IVKGRIEKTN LGQVAKSIKV VMTSRSASVV ITLDMKRIQD AHLNIDANIV KESILRTKKT KLKPEHIKIL DIKKLEVVPQ DVDRSKIHFQ
1201: LHYLKNLLPT VVVKGIKTVD RVVISKDTKA EKFRLLVEGT GFREVMGVEG IDGRKTVSNH IHEVRDTLGI EAARESIVKE IKYTMVDTHG MNIDIRHMML
1301: LADMMTATGH ILGINRFGIS KMGKSVLMLA SFERTADILF QASVRGRDDS IGGVSESIIM GIPIQIGTGM IKVKQRLDPP ELPHGTSPIL S
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.