Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G494500.1 | Wheat | nucleus | 94.53 | 96.56 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 94.46 | 96.49 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 94.32 | 96.34 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 13.19 | 86.64 |
| Os04t0492300-01 | Rice | nucleus | 82.81 | 85.32 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 8.84 | 85.14 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 13.4 | 83.77 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 44.42 | 82.96 |
| EES11045 | Sorghum | nucleus | 80.21 | 82.17 |
| Zm00001d003203_P003 | Maize | cytosol | 79.65 | 81.42 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 9.05 | 80.12 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 8.21 | 79.05 |
| GSMUA_Achr5P29280_001 | Banana | nucleus | 72.84 | 65.49 |
| VIT_06s0004g03730.t01 | Wine grape | mitochondrion, nucleus, plastid | 14.88 | 64.05 |
| VIT_06s0004g03740.t01 | Wine grape | nucleus | 47.72 | 63.37 |
| Solyc11g072730.1.1 | Tomato | nucleus | 61.54 | 63.09 |
| KRG88695 | Soybean | nucleus | 60.28 | 61.75 |
| Bra020267.1-P | Field mustard | nucleus | 57.54 | 59.85 |
| CDY09230 | Canola | nucleus | 57.54 | 59.85 |
| AT5G60040.2 | Thale cress | cytosol | 57.26 | 58.66 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 2.74 | 39.0 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 22.53 | 37.15 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 20.77 | 32.53 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 5.75 | 29.08 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 33.12 | 26.5 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 32.91 | 24.78 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 26.04 | 20.87 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 4.56 | 17.11 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 16.98 | 16.15 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 1.54 | 14.86 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 11.51 | 12.8 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 17.05 | 12.32 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.3.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A287TNT3 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | EnsemblPlantsGene:HORVU6Hr1G027050 | EnsemblPlants:HORVU6Hr1G027050.1 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF32 | InterPro:RNAP_III_RPC1_N |
| InterPro:RNAP_III_Rpc1_C | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000B46C84C | SEG:seg |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287TNT3]
Coordinates
chrchr6H:-:104060786..104075826
Molecular Weight (calculated)
158296.0 Da
IEP (calculated)
9.060
GRAVY (calculated)
-0.231
Length
1425 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLRQEEKLRC TKEPFIEDDG TRRIKSMRFS MLSGKEIRQS AEAQVWNNRI YGPDMKPVPN GLLDTRMGAA NKQGNCGTCH GSYTECPGHF GYLKLALPVF
0101: NVGFFNNILD VVKCICKGCS RVLLVEKDRR EFLKKMRQPR AEPLVKLALM KKVRDKCKLS RCPWCGYING KLPSNTPFSP MFLVAFKFPL GIPSNELVGC
0201: TGVAKKGRMG LVIVHDCSKT LDGSTEELRS ALSHKKEKLA ITSVHTLDPA TVLSLFRRMT DEDCELLNLG DRPEKLIITE IAVPPVPIRP SVFVGGGRMS
0301: NEDSITCILK NIVNTNSILK GTLQSGEPLV KCFDCWQHLQ LQVVEYVNSD APCLVDSQHR GLIQRLKGKT GRFRGNLSGK RTEYTGRTVI SPDPNLRITE
0401: VAIPILMARV LTYPERVSYY NIEKLRQCIR NGPHKHPGAN FIIQPDGTKL HLKYCDRRIA ARELKYGCIV ERHLEDGDIV LFNRQPSLHR MSIMSHRARI
0501: MPWRTLRFNE SVCNPYNADF DGDEMNLHVP QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDSFYD RSSFTLLCSY LGDAMENIDL
0601: PTPALIKPIE LWTGKQLFSV LVRPNAFTKV YLNLTVREKI CTKKCSLTVE DKTSEAVHEA MCPNDGFVYF RNSELLSGQV GKKTLGNGNN EGMFSVLIRD
0701: YNSHAAASCM NRLAKFSARF IGNHGFSIGV DDVQPGESLN EKKGKTIGEG YQECHELIAQ YSKGALKPQP GCTRAQTLEA RISGVLNKLR DTAGDHCMST
0801: LHWRNSPLIM SQCGSKGSPI NISQMVVCVG QQSVGGRRAP NGFIDRTLPH FPINSKTPAA KGFVANSFYT GLTATEFFFH TMGGREGLVD TAVKTAETGY
0901: MSRRLMKGLE DLSVFYDQTV RNASGGIVQF VYGDDGMDPV KMEGKGGSPL NMDQLFMKVM ATCPQRGHET LSPDAISQML NDKLSKQDTS SGGCSDKFKE
1001: LLTKFIGNRI KMLRSTRRAL HLDEDHVGTK DSSIEECIAA NISGISAKQL EVFLDTCLSR YHSKIIEAGA SIGAIGAQSI GEPGTQMTLK TFHFAGVASM
1101: NVTLGVPRIK EIINAAKKIS TPIITAELLS GQDESFGVKV KRCIEKVVLG EVAAAIKIVL KSSQPNLVVK LDMQRIEAQG YVGISANSVQ LSIINYSKLK
1201: LKSEHVRVID EDKLRIYPSG TDRSKLQFEL HNLKSMLPKV IVKGIPTVER AVVNPVKGRD RNIERYNLLV EGTNLLAVLG APGVDAMKTK SNHIMEVNQT
1301: LGIEAARRSI IDEIQYTFES NNMIIDLRHM MLLADLMTYK GEVLGITRYG IAKMKSSVLM LASFEKTSEH LFNASYAGRE DQIDGVSECI IMGIPMRLGT
1401: GILQVRQRLE SVPELKYQTD PIMSS
0101: NVGFFNNILD VVKCICKGCS RVLLVEKDRR EFLKKMRQPR AEPLVKLALM KKVRDKCKLS RCPWCGYING KLPSNTPFSP MFLVAFKFPL GIPSNELVGC
0201: TGVAKKGRMG LVIVHDCSKT LDGSTEELRS ALSHKKEKLA ITSVHTLDPA TVLSLFRRMT DEDCELLNLG DRPEKLIITE IAVPPVPIRP SVFVGGGRMS
0301: NEDSITCILK NIVNTNSILK GTLQSGEPLV KCFDCWQHLQ LQVVEYVNSD APCLVDSQHR GLIQRLKGKT GRFRGNLSGK RTEYTGRTVI SPDPNLRITE
0401: VAIPILMARV LTYPERVSYY NIEKLRQCIR NGPHKHPGAN FIIQPDGTKL HLKYCDRRIA ARELKYGCIV ERHLEDGDIV LFNRQPSLHR MSIMSHRARI
0501: MPWRTLRFNE SVCNPYNADF DGDEMNLHVP QTEEARTEAL MLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDSFYD RSSFTLLCSY LGDAMENIDL
0601: PTPALIKPIE LWTGKQLFSV LVRPNAFTKV YLNLTVREKI CTKKCSLTVE DKTSEAVHEA MCPNDGFVYF RNSELLSGQV GKKTLGNGNN EGMFSVLIRD
0701: YNSHAAASCM NRLAKFSARF IGNHGFSIGV DDVQPGESLN EKKGKTIGEG YQECHELIAQ YSKGALKPQP GCTRAQTLEA RISGVLNKLR DTAGDHCMST
0801: LHWRNSPLIM SQCGSKGSPI NISQMVVCVG QQSVGGRRAP NGFIDRTLPH FPINSKTPAA KGFVANSFYT GLTATEFFFH TMGGREGLVD TAVKTAETGY
0901: MSRRLMKGLE DLSVFYDQTV RNASGGIVQF VYGDDGMDPV KMEGKGGSPL NMDQLFMKVM ATCPQRGHET LSPDAISQML NDKLSKQDTS SGGCSDKFKE
1001: LLTKFIGNRI KMLRSTRRAL HLDEDHVGTK DSSIEECIAA NISGISAKQL EVFLDTCLSR YHSKIIEAGA SIGAIGAQSI GEPGTQMTLK TFHFAGVASM
1101: NVTLGVPRIK EIINAAKKIS TPIITAELLS GQDESFGVKV KRCIEKVVLG EVAAAIKIVL KSSQPNLVVK LDMQRIEAQG YVGISANSVQ LSIINYSKLK
1201: LKSEHVRVID EDKLRIYPSG TDRSKLQFEL HNLKSMLPKV IVKGIPTVER AVVNPVKGRD RNIERYNLLV EGTNLLAVLG APGVDAMKTK SNHIMEVNQT
1301: LGIEAARRSI IDEIQYTFES NNMIIDLRHM MLLADLMTYK GEVLGITRYG IAKMKSSVLM LASFEKTSEH LFNASYAGRE DQIDGVSECI IMGIPMRLGT
1401: GILQVRQRLE SVPELKYQTD PIMSS
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.