Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 15.72 | 99.29 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 45.31 | 93.4 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 91.91 | 90.09 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 91.69 | 89.23 |
| Zm00001d024583_P003 | Maize | nucleus | 86.13 | 82.92 |
| EES13372 | Sorghum | nucleus | 86.02 | 82.5 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.12 | 82.25 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 50.98 | 80.93 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 85.46 | 80.4 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.85 | 79.92 |
| KRH76591 | Soybean | nucleus | 81.75 | 79.69 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.26 | 79.66 |
| KRH28855 | Soybean | nucleus | 81.7 | 79.64 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.37 | 79.47 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.36 | 79.39 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 40.37 | 79.01 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 62.27 | 78.76 |
| KRH40807 | Soybean | nucleus | 77.93 | 78.33 |
| Bra010510.1-P | Field mustard | nucleus | 80.12 | 78.23 |
| AT4G35800.1 | Thale cress | nucleus | 80.52 | 77.98 |
| CDY08876 | Canola | nucleus | 68.11 | 74.92 |
| CDY71816 | Canola | cytosol | 11.96 | 74.74 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.67 | 70.99 |
| CDX75527 | Canola | nucleus | 78.21 | 51.29 |
| Bra011638.1-P | Field mustard | nucleus | 77.88 | 51.2 |
| CDX69166 | Canola | cytosol | 75.18 | 50.72 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 5.17 | 42.4 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 2.3 | 41.0 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 5.22 | 40.79 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 2.92 | 35.14 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 2.81 | 33.78 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 26.5 | 33.12 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 13.87 | 32.37 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 2.92 | 32.3 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 21.9 | 21.93 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 4.15 | 19.47 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 14.65 | 17.42 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 11.9 | 16.55 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 17.24 | 15.57 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 1.01 | 12.16 |
Protein Annotations
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287STB9]
Coordinates
chrchr5H:+:643787096..643795670
Molecular Weight (calculated)
199076.0 Da
IEP (calculated)
6.261
GRAVY (calculated)
-0.416
Length
1781 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFAHSPA GVAKVQLVQF GVLSPDEMRQ MSVAVIEHPE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMSCVCFNCS KILADENDDK DKKFKQALRI KNPKNRLRKI NEACKNKKVC SAGEDDLEGQ DQLDTDGPVK KRGGCGAQQP KIRVDGMNMV AEFKITNKKN
0201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVLPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGAPA
0301: HIITEIAQLL QFQIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNMTY PETVTPYNIE
0401: RLKVLVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ISKRDTLIEK DVFMNILMWW EDFDGKVPAP AILKPRPIWT GKQVFNLIIP
0601: KQINLIRFSA WHDADAEKES RYITPSDTMV RIEKGELLSG ILCKKTLGTS MGSLIHVIWE EVGPDAARKF LGHTQWLVNY WLLQHGFSIG IGDTIADAGT
0701: MKKISDTISK AKTDVDELIK KAHNKKLEPE PGRTMMESFE NQVNQVLNKA RDDAGSSAQK SLSDGNNLKA MVTAGSKGIF INISQMTACV GQQNVEGKRI
0801: PFGFAGRTLP HFSQNNYGPE SRGFVENSYL RGLTPEEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSLGDVIQ FLYGEDGMDA
0901: VWIEPQKLDS LGMKKAEFDN VFRYELDDEN WRPTYMSPEE ADDLKSNRDI TTVFEVEFQK LEADRLQLGT EIVTTGDITW PMPVNLKRLI WNAQKTFKID
1001: LRRSSDMHPM EIVEAMDKLQ ERLKVVPGDD AMSVEAQKNA TLLFNILLRS TFASKRVLKE YRLTRESFGW VIGEIESRFQ QSLVAPGEMI GCVAAQSIGE
1101: PATQMTLNTF HYAGVSAKNV TLGVPRLREI INVAKKIKTP SLSVFLNPEV SKKKELAKNV QCALEYTTLR NVTHATEIWY DPDPLGTIIE EDVEFVKSYY
1201: EMPDEDIDPD KLSPWLLRIE LNREMMVDKR LSMAEIAEKI KGEFDDDLSC IFNDDNADKL ILRIRIKNDD EAPKQDEDDE VFLKKVESNM LTEMALGGIP
1301: DINKVFIKER KVNKFDENDG FTRKADNNEW MLDTEGVNLL AVMCHEDVDA TRTTSNHLIE VIEVLGIEAV RRSLLDELRV VISFDGSYVN YRHLAILCDT
1401: MTYRGHLMAI TRHGINRNDT GPLMRCSFEE TVDILLDAAV YAESDYLRGV TENIMLGQLA PIGTGGCELY LNDEMLKQAI ELQLPSYVEG LDYGSGMTSV
1501: CSPISGTPYH DVGMMSPVLS PNYRASPITG AHFSPYVGGM AFSPVPSNYS QSYMPGSSSY SPTSPSYSPT SPIYSPTSSI YSPASPVYSP TSPVHRPTSL
1601: AYSPTSPVYS QTSLAYSPTS PVYSRTSLAY SPTSPSYSPT STLYSPTSPA YSPTSPSYSP TVPSSYSPTS PGYRPTSPSY SPTSPSYSPT SPSYSPTSPN
1701: YSLTSPSYSP TSPNYCPTSP SYSPTSPNYC PTSPSYSPTS PSYSPSHAYS PSSPKMMSPY SQAPPNYRYS VDSFGICAFI C
0101: IMSCVCFNCS KILADENDDK DKKFKQALRI KNPKNRLRKI NEACKNKKVC SAGEDDLEGQ DQLDTDGPVK KRGGCGAQQP KIRVDGMNMV AEFKITNKKN
0201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVLPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGAPA
0301: HIITEIAQLL QFQIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNMTY PETVTPYNIE
0401: RLKVLVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVLE LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ISKRDTLIEK DVFMNILMWW EDFDGKVPAP AILKPRPIWT GKQVFNLIIP
0601: KQINLIRFSA WHDADAEKES RYITPSDTMV RIEKGELLSG ILCKKTLGTS MGSLIHVIWE EVGPDAARKF LGHTQWLVNY WLLQHGFSIG IGDTIADAGT
0701: MKKISDTISK AKTDVDELIK KAHNKKLEPE PGRTMMESFE NQVNQVLNKA RDDAGSSAQK SLSDGNNLKA MVTAGSKGIF INISQMTACV GQQNVEGKRI
0801: PFGFAGRTLP HFSQNNYGPE SRGFVENSYL RGLTPEEFFF HAMGGREGLI DTAVKTSETG YIQRRLVKAM EDIMVKYDGT VRNSLGDVIQ FLYGEDGMDA
0901: VWIEPQKLDS LGMKKAEFDN VFRYELDDEN WRPTYMSPEE ADDLKSNRDI TTVFEVEFQK LEADRLQLGT EIVTTGDITW PMPVNLKRLI WNAQKTFKID
1001: LRRSSDMHPM EIVEAMDKLQ ERLKVVPGDD AMSVEAQKNA TLLFNILLRS TFASKRVLKE YRLTRESFGW VIGEIESRFQ QSLVAPGEMI GCVAAQSIGE
1101: PATQMTLNTF HYAGVSAKNV TLGVPRLREI INVAKKIKTP SLSVFLNPEV SKKKELAKNV QCALEYTTLR NVTHATEIWY DPDPLGTIIE EDVEFVKSYY
1201: EMPDEDIDPD KLSPWLLRIE LNREMMVDKR LSMAEIAEKI KGEFDDDLSC IFNDDNADKL ILRIRIKNDD EAPKQDEDDE VFLKKVESNM LTEMALGGIP
1301: DINKVFIKER KVNKFDENDG FTRKADNNEW MLDTEGVNLL AVMCHEDVDA TRTTSNHLIE VIEVLGIEAV RRSLLDELRV VISFDGSYVN YRHLAILCDT
1401: MTYRGHLMAI TRHGINRNDT GPLMRCSFEE TVDILLDAAV YAESDYLRGV TENIMLGQLA PIGTGGCELY LNDEMLKQAI ELQLPSYVEG LDYGSGMTSV
1501: CSPISGTPYH DVGMMSPVLS PNYRASPITG AHFSPYVGGM AFSPVPSNYS QSYMPGSSSY SPTSPSYSPT SPIYSPTSSI YSPASPVYSP TSPVHRPTSL
1601: AYSPTSPVYS QTSLAYSPTS PVYSRTSLAY SPTSPSYSPT STLYSPTSPA YSPTSPSYSP TVPSSYSPTS PGYRPTSPSY SPTSPSYSPT SPSYSPTSPN
1701: YSLTSPSYSP TSPNYCPTSP SYSPTSPNYC PTSPSYSPTS PSYSPSHAYS PSSPKMMSPY SQAPPNYRYS VDSFGICAFI C
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.