Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G499000.1 | Wheat | nucleus | 96.17 | 96.86 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 89.23 | 91.69 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 73.28 | 91.16 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 90.87 | 90.04 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 89.67 | 88.27 |
| Zm00001d024583_P003 | Maize | nucleus | 87.54 | 86.59 |
| EES13372 | Sorghum | nucleus | 87.43 | 86.16 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 87.1 | 86.02 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 40.27 | 84.91 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.13 | 84.55 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 51.53 | 84.05 |
| KRH76591 | Soybean | nucleus | 82.4 | 82.54 |
| KRH28855 | Soybean | nucleus | 82.35 | 82.48 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.73 | 82.02 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.4 | 82.0 |
| KRH40807 | Soybean | nucleus | 78.85 | 81.43 |
| Bra010510.1-P | Field mustard | nucleus | 80.82 | 81.09 |
| AT4G35800.1 | Thale cress | nucleus | 81.31 | 80.91 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.64 | 80.68 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.27 | 80.61 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 61.2 | 79.55 |
| CDY71816 | Canola | cytosol | 11.97 | 76.84 |
| CDY08876 | Canola | nucleus | 67.92 | 76.78 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.36 | 71.5 |
| Bra011638.1-P | Field mustard | nucleus | 78.2 | 52.82 |
| CDX69166 | Canola | cytosol | 75.63 | 52.42 |
| CDX75527 | Canola | nucleus | 77.76 | 52.39 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 13.55 | 34.49 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 25.85 | 33.91 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 20.66 | 22.81 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 14.54 | 18.67 |
| TraesCS3D01G522400.1 | Wheat | plastid | 14.7 | 16.71 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 17.54 | 16.49 |
Protein Annotations
Description
No Description!
Coordinates
chr5D:+:528714142..528722413
Molecular Weight (calculated)
203936.0 Da
IEP (calculated)
6.052
GRAVY (calculated)
-0.450
Length
1830 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFAHSPA EAAKVQLVQF GILSPDEIRQ MSVAVIEHAE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADEDDEK GNNKFKQALK IKNPKNRLRK IQEACKSKKV CSAGEDDLEG QDTDEPVKKR GGCGAQQPKI TVDGMKMVAE FKATNKKNGD
0201: QDQLPEPVER KQILSAERVL NVLKRISDED CLLLGLDPKY ARPDWMILQV LPIPPPPVRP SVMMDTYSRS EDDLTHQLAM IIRHNENLRR QERNGAPAHI
0301: IAEFAQLLQF HIATYFDNDL PGQPRATQRS GRPIKSICSR LKAKEGRVRG NLMGKRVDFS ARTVITPDPN INIDELGVPW SIALNLTYPE TVTPYNIERL
0401: KELVEYGPHP PPGKTGAKYI IREDGQRLDL RYLKKSSDQH LELGYKVERH LVDGDFVLFN RQPSLHKMSI MGHRIKIMPY STFRLNLSVT SPYNADFDGD
0501: EMNMHVPQSF ETRAEVLELM MVPKCIVSPQ ANKPVMGIVQ DTLLGCRKIT KRDTLIEKDV FMNILMWWED FDGKVPTPAI LKPKPIWTGK QVFNLIIPKQ
0601: INLIRFSAWH DADAEKESGY ITPSDTMVRI EKGELLSGIL CKKTLGTSMG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL LQNGFSIGIG DTIADAGTMG
0701: KINDTIADAK KAVNELIKEA RDKKLEPEPG RTMMESFENR VNQVLNKARD DAGSSAQKSL SESNNLKAMV TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF
0801: GFAGRTLPHF SQNDNGPESR GFVQNSYLRG LTPEEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR NSLGDVIQFL YGEDGMDAVW
0901: IERQKLDTLG MKKAEFDNVF RYKLDDENWR PTYMSPEQAD DLKTIRDIRI VFEAEIQKLE ADRLQLGTEI ATTGDITWPM PVNLKRLIWN AQKTFKIDLR
1001: RPSDMHPMEI VEAMDKLQER LKVVPGDDAM SIEAQKNATL LFNILLRSTF ASKRILKEYK LTRESFEWVI GEIESRFHQS LVAPGEMIGC VAAQSIGEPA
1101: TQMTLNTFHY AGVSAKNVTL GVPRLREIIN VAKKIKTPSL SVFLKPEVSK KKELAKNVQC ALEYTTLRSV THATEIWYDP DPLGTTIEED VEFVKSYYEM
1201: PDEDIDPDKL SPWLLRIELN REMMVDKRLS MAEIAEKIRH EFDDDLSCIF NDDNADKLIL RIRIKNDDET PKQDEDDDVF LKKVESNMLT EMALGGIADI
1301: NKVFIKEKKV NRFDENDGFT QKEEWMLDTE GVNLLAVMCH EDVDATRTRS NHLIEVIEVL GIEAVRRSLL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAVYAESD YLRGVTENIM LGQLAPIGTG GCGLYLNEEM LKQAIELQLP SYVEGLDYGY GMASAHSSIS
1501: GTPYHDGGMM SPVLSPNFQA SPVTGAQFSP YVGGMAFSPV PSNYSQSYTS GPPSYSPTSL SYSPTSPIYS PVSPICSPAS TVYSPTSPVY SPTSLSYSPT
1601: SPVYSPTSPV YSRTSLAYSP TSPSYSPTSP LYSPTSPSYS PTLPSSYSPT SPGYSPTSPN YSLTSPSYSP TSPNYCPTSP SYSPTSPNYC PTSPSYSPTS
1701: PNYCPTSPGY CLMSPSYSPT SPNYCPRSPS YSPTSPSYSP SHAYSPSSPK MMSPYSQAPP NYSPASPTYS PTSPSYAQPS PSYSPTSPHT TSGGPSPDYS
1801: PTSPNYSPSA SYSPSSTGPQ TTDMDDETAT
0101: IMRCVCFNCS KILADEDDEK GNNKFKQALK IKNPKNRLRK IQEACKSKKV CSAGEDDLEG QDTDEPVKKR GGCGAQQPKI TVDGMKMVAE FKATNKKNGD
0201: QDQLPEPVER KQILSAERVL NVLKRISDED CLLLGLDPKY ARPDWMILQV LPIPPPPVRP SVMMDTYSRS EDDLTHQLAM IIRHNENLRR QERNGAPAHI
0301: IAEFAQLLQF HIATYFDNDL PGQPRATQRS GRPIKSICSR LKAKEGRVRG NLMGKRVDFS ARTVITPDPN INIDELGVPW SIALNLTYPE TVTPYNIERL
0401: KELVEYGPHP PPGKTGAKYI IREDGQRLDL RYLKKSSDQH LELGYKVERH LVDGDFVLFN RQPSLHKMSI MGHRIKIMPY STFRLNLSVT SPYNADFDGD
0501: EMNMHVPQSF ETRAEVLELM MVPKCIVSPQ ANKPVMGIVQ DTLLGCRKIT KRDTLIEKDV FMNILMWWED FDGKVPTPAI LKPKPIWTGK QVFNLIIPKQ
0601: INLIRFSAWH DADAEKESGY ITPSDTMVRI EKGELLSGIL CKKTLGTSMG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL LQNGFSIGIG DTIADAGTMG
0701: KINDTIADAK KAVNELIKEA RDKKLEPEPG RTMMESFENR VNQVLNKARD DAGSSAQKSL SESNNLKAMV TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF
0801: GFAGRTLPHF SQNDNGPESR GFVQNSYLRG LTPEEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR NSLGDVIQFL YGEDGMDAVW
0901: IERQKLDTLG MKKAEFDNVF RYKLDDENWR PTYMSPEQAD DLKTIRDIRI VFEAEIQKLE ADRLQLGTEI ATTGDITWPM PVNLKRLIWN AQKTFKIDLR
1001: RPSDMHPMEI VEAMDKLQER LKVVPGDDAM SIEAQKNATL LFNILLRSTF ASKRILKEYK LTRESFEWVI GEIESRFHQS LVAPGEMIGC VAAQSIGEPA
1101: TQMTLNTFHY AGVSAKNVTL GVPRLREIIN VAKKIKTPSL SVFLKPEVSK KKELAKNVQC ALEYTTLRSV THATEIWYDP DPLGTTIEED VEFVKSYYEM
1201: PDEDIDPDKL SPWLLRIELN REMMVDKRLS MAEIAEKIRH EFDDDLSCIF NDDNADKLIL RIRIKNDDET PKQDEDDDVF LKKVESNMLT EMALGGIADI
1301: NKVFIKEKKV NRFDENDGFT QKEEWMLDTE GVNLLAVMCH EDVDATRTRS NHLIEVIEVL GIEAVRRSLL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAVYAESD YLRGVTENIM LGQLAPIGTG GCGLYLNEEM LKQAIELQLP SYVEGLDYGY GMASAHSSIS
1501: GTPYHDGGMM SPVLSPNFQA SPVTGAQFSP YVGGMAFSPV PSNYSQSYTS GPPSYSPTSL SYSPTSPIYS PVSPICSPAS TVYSPTSPVY SPTSLSYSPT
1601: SPVYSPTSPV YSRTSLAYSP TSPSYSPTSP LYSPTSPSYS PTLPSSYSPT SPGYSPTSPN YSLTSPSYSP TSPNYCPTSP SYSPTSPNYC PTSPSYSPTS
1701: PNYCPTSPGY CLMSPSYSPT SPNYCPRSPS YSPTSPSYSP SHAYSPSSPK MMSPYSQAPP NYSPASPTYS PTSPSYAQPS PSYSPTSPHT TSGGPSPDYS
1801: PTSPNYSPSA SYSPSSTGPQ TTDMDDETAT
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.