Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G498800.1 | Wheat | nucleus | 95.45 | 96.76 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 44.94 | 96.06 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 72.77 | 91.37 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 90.04 | 90.87 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 88.31 | 87.74 |
| Zm00001d024583_P003 | Maize | nucleus | 86.63 | 86.49 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 86.36 | 86.08 |
| EES13372 | Sorghum | nucleus | 86.41 | 85.95 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 39.85 | 84.79 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 21.87 | 84.34 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 50.73 | 83.51 |
| KRH28855 | Soybean | nucleus | 81.27 | 82.16 |
| KRH76591 | Soybean | nucleus | 81.21 | 82.1 |
| PGSC0003DMT400009249 | Potato | nucleus | 81.38 | 81.73 |
| Solyc02g083350.2.1 | Tomato | nucleus | 81.65 | 81.69 |
| KRH40807 | Soybean | nucleus | 77.42 | 80.7 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.53 | 80.68 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.2 | 80.61 |
| Bra010510.1-P | Field mustard | nucleus | 79.43 | 80.43 |
| AT4G35800.1 | Thale cress | nucleus | 79.81 | 80.15 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 60.8 | 79.76 |
| CDY08876 | Canola | nucleus | 67.14 | 76.59 |
| CDY71816 | Canola | cytosol | 11.69 | 75.79 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.32 | 72.01 |
| Bra011638.1-P | Field mustard | nucleus | 76.88 | 52.42 |
| CDX69166 | Canola | cytosol | 74.5 | 52.12 |
| CDX75527 | Canola | nucleus | 76.61 | 52.1 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 13.26 | 34.08 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 25.5 | 33.76 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 20.84 | 23.23 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 14.24 | 18.46 |
| TraesCS3D01G522400.1 | Wheat | plastid | 14.56 | 16.71 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 16.84 | 15.97 |
Protein Annotations
Description
No Description!
Coordinates
chr5D:-:528617111..528625160
Molecular Weight (calculated)
206062.0 Da
IEP (calculated)
5.653
GRAVY (calculated)
-0.460
Length
1847 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFAYSPA ETARVQLVQF GILSPDEIRQ MSVAVIEHAE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADEDDEK DGKFKQALRI KNPKNRLRKI QEACKGKKVC AAGEDDLEGQ DQMDTDEPVK KRGGCGAQQP KITVDGMKMV AEFKATNKKN
0201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVLPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGVPA
0301: HIITEFAQLL QFHIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKELVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVME LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ITKRDTLIEK DVFMNILMWW EDFDGKVPAP AILKPRPIWT GKQVFNLIIP
0601: KRINLIRFSA WHDEEESRFI TPGDTVVRIE KGELLSGILC KKTLGTSMGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QHGFSIGIGD TIADAGTMKK
0701: ISDTISKAQD DVNELIKEAR DNKLEPEPGR TMMESFENKV NQVLNKARDD SGSSAQQSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPFG
0801: FAGRTLPHFT QNDDSPESRG FVENSYLRGL TPQEFFFHAM GGREGLIDTA VKTSETGYIQ RRLVKAMEDI MVKYDGTVRN SLGDVIQFLY GEDGMDAVWI
0901: EPQKLDSLGM KKAEFDNVFR YELDDENWRP TYMSPEDADV LKTVPDIRLV FEAEFQKLEA DRLQLGTEIA TTGDITWPMP VNLKRLIWNA QKTFKIDLRR
1001: PSDMHPMEIV EAMDKLQERL KVVPGDDAMS IEAQKNATLL FNILLRSTFA SKRVLKEYRL TRESFEWVIG EIESRFLQSL VAPGEMIGCV AAQSIGEPAT
1101: QMTLNTFHYA GVSAKNVTLG VPRLREIINV AKKIKTPSLS VFLKPEVSKK KELAKNVQCA LEYTTLRSVT HATEIWYDPD PLRTTIEEDV EFVKSYYEMP
1201: DEDIDPDKMS PWLLRIELNR EMMVDKRLSM AEIAEKIKCE FDDDLSCIFN DDNADKLILR IRIKNDDEVP KQDEDDDVFL KKVESNMLTE MALGGIPDIN
1301: KVFIKERKVN KFDENDGFTQ KSDNKDKNKE WMLDTEGVNL LAVMCHEDVD TTRTTSNHLI EVIEVLGIEA VRRSLLDELR AVISFDGSYV NYRHLAILCD
1401: TMTYRGHLMA ITRHGINRND TGPLMRCSFE ETVDILLDAA MYAESDHLRG VTENIMLGQL APIGTGGCEL YLNDKMLEQA IELQLPSFVE GLDYGMTPAP
1501: SPISGMMSPV PSPNFRTSPV TDHALQFSPY VGGLAFSPVP SNYSTSSGSG YCPSSPVFSP GPGGQGYSPV SPVYSPLSPI YTPTSLSYSP VSPIHSPESP
1601: VYSPASPVFR PTSLQYSPTS PVYSPTSLEY SPTSPSYSPT SHAYSPTSPS YSPTSHAYSP TSPSYSPTSP VYSPASFSTS PYYNPTSPSY SPTSHSYSPT
1701: SPRYSPASPS YSPTSPNYSP TSPAYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPSRAYS PSSPMMMSPY SQLPPNYSLA SPTYSPTSPS YAAQPSPSYS
1801: PTSPCTASGG PSPDYSLTSP NYSPSASYSP PSTEPQTSDK DDDKSAP
0101: IMRCVCFNCS KILADEDDEK DGKFKQALRI KNPKNRLRKI QEACKGKKVC AAGEDDLEGQ DQMDTDEPVK KRGGCGAQQP KITVDGMKMV AEFKATNKKN
0201: GDQDQLPEPV ERKQILSAER VLNVLKRISD EDCLLLGLDP KYARPDWMIL QVLPIPPPPV RPSVMMDTSS RSEDDLTHQL AMIIRHNENL RRQERNGVPA
0301: HIITEFAQLL QFHIATYFDN DLPGQPRATQ RSGRPIKSIC SRLKAKEGRV RGNLMGKRVD FSARTVITPD PNINIDELGV PWSIALNLTY PETVTPYNIE
0401: RLKELVENGP HPPPGKTGAK YIIREDGQRL DLRYVKKSSD QHLELGYKVE RHLIDGDFVL FNRQPSLHKM SIMGHRIKIM PYSTFRLNLS VTSPYNADFD
0501: GDEMNMHVPQ SFETRAEVME LMMVPKCIVS PQANRPVMGI VQDTLLGCRK ITKRDTLIEK DVFMNILMWW EDFDGKVPAP AILKPRPIWT GKQVFNLIIP
0601: KRINLIRFSA WHDEEESRFI TPGDTVVRIE KGELLSGILC KKTLGTSMGS LIHVIWEEVG PDAARKFLGH TQWLVNYWLL QHGFSIGIGD TIADAGTMKK
0701: ISDTISKAQD DVNELIKEAR DNKLEPEPGR TMMESFENKV NQVLNKARDD SGSSAQQSLS ESNNLKAMVT AGSKGSFINI SQMTACVGQQ NVEGKRIPFG
0801: FAGRTLPHFT QNDDSPESRG FVENSYLRGL TPQEFFFHAM GGREGLIDTA VKTSETGYIQ RRLVKAMEDI MVKYDGTVRN SLGDVIQFLY GEDGMDAVWI
0901: EPQKLDSLGM KKAEFDNVFR YELDDENWRP TYMSPEDADV LKTVPDIRLV FEAEFQKLEA DRLQLGTEIA TTGDITWPMP VNLKRLIWNA QKTFKIDLRR
1001: PSDMHPMEIV EAMDKLQERL KVVPGDDAMS IEAQKNATLL FNILLRSTFA SKRVLKEYRL TRESFEWVIG EIESRFLQSL VAPGEMIGCV AAQSIGEPAT
1101: QMTLNTFHYA GVSAKNVTLG VPRLREIINV AKKIKTPSLS VFLKPEVSKK KELAKNVQCA LEYTTLRSVT HATEIWYDPD PLRTTIEEDV EFVKSYYEMP
1201: DEDIDPDKMS PWLLRIELNR EMMVDKRLSM AEIAEKIKCE FDDDLSCIFN DDNADKLILR IRIKNDDEVP KQDEDDDVFL KKVESNMLTE MALGGIPDIN
1301: KVFIKERKVN KFDENDGFTQ KSDNKDKNKE WMLDTEGVNL LAVMCHEDVD TTRTTSNHLI EVIEVLGIEA VRRSLLDELR AVISFDGSYV NYRHLAILCD
1401: TMTYRGHLMA ITRHGINRND TGPLMRCSFE ETVDILLDAA MYAESDHLRG VTENIMLGQL APIGTGGCEL YLNDKMLEQA IELQLPSFVE GLDYGMTPAP
1501: SPISGMMSPV PSPNFRTSPV TDHALQFSPY VGGLAFSPVP SNYSTSSGSG YCPSSPVFSP GPGGQGYSPV SPVYSPLSPI YTPTSLSYSP VSPIHSPESP
1601: VYSPASPVFR PTSLQYSPTS PVYSPTSLEY SPTSPSYSPT SHAYSPTSPS YSPTSHAYSP TSPSYSPTSP VYSPASFSTS PYYNPTSPSY SPTSHSYSPT
1701: SPRYSPASPS YSPTSPNYSP TSPAYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPSRAYS PSSPMMMSPY SQLPPNYSLA SPTYSPTSPS YAAQPSPSYS
1801: PTSPCTASGG PSPDYSLTSP NYSPSASYSP PSTEPQTSDK DDDKSAP
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.