Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | EER89414 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | EER88795 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024583_P003 | Maize | nucleus | 98.01 | 98.38 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 93.91 | 94.17 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 94.13 | 94.03 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 94.13 | 94.03 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 54.87 | 90.82 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 23.26 | 90.19 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 90.25 | 90.16 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 89.93 | 90.12 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 41.9 | 90.05 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 89.88 | 89.83 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 90.47 | 88.75 |
| KRH28855 | Soybean | nucleus | 86.48 | 87.9 |
| KRH76591 | Soybean | nucleus | 86.21 | 87.63 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 86.16 | 87.43 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 69.2 | 87.36 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 85.35 | 87.23 |
| Solyc02g083350.2.1 | Tomato | nucleus | 86.65 | 87.16 |
| PGSC0003DMT400009249 | Potato | nucleus | 86.21 | 87.06 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 85.95 | 86.41 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 82.5 | 86.02 |
| KRH40807 | Soybean | nucleus | 81.53 | 85.44 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 83.74 | 85.35 |
| Bra010510.1-P | Field mustard | nucleus | 83.79 | 85.31 |
| AT4G35800.1 | Thale cress | nucleus | 83.84 | 84.67 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 63.54 | 83.81 |
| EES08565 | Sorghum | nucleus | 84.49 | 83.55 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.69 | 82.2 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.22 | 81.21 |
| CDY08876 | Canola | nucleus | 70.44 | 80.79 |
| CDY71816 | Canola | cytosol | 12.22 | 79.65 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.72 | 74.3 |
| Bra011638.1-P | Field mustard | nucleus | 80.24 | 55.0 |
| CDX75527 | Canola | nucleus | 79.81 | 54.57 |
| CDX69166 | Canola | cytosol | 77.44 | 54.47 |
| EES11045 | Sorghum | nucleus | 25.36 | 33.86 |
| KXG22455 | Sorghum | nucleus | 21.49 | 23.04 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 14.76 | 18.46 |
| KXG34194 | Sorghum | nucleus | 14.59 | 17.18 |
| OQU84386 | Sorghum | nucleus | 16.64 | 15.34 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.2.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1360.140 | Gene3D:3.30.1490.180 | EntrezGene:8076592 |
| UniProt:C5YGY9 | EnsemblPlants:EES13372 | ProteinID:EES13372 | ProteinID:EES13372.1 | GO:GO:0001055 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:IPR038120 | InterPro:IPR038593 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04990 | PFAM:PF04992 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PFAM:PF05001 |
| PRINTS:PR01217 | ScanProsite:PS00115 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 | InterPro:RNA_pol_II_repeat_euk | InterPro:RNA_pol_N |
| InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_Rpb1_6 | InterPro:RNA_pol_Rpb1_7 |
| InterPro:RNA_pol_Rpb1_7_sf | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | EnsemblPlantsGene:SORBI_3007G044100 | SUPFAM:SSF64484 |
| unigene:Sbi.9033 | UniParc:UPI0001A873ED | RefSeq:XP_002443877.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:+:4452815..4462263
Molecular Weight (calculated)
206909.0 Da
IEP (calculated)
5.806
GRAVY (calculated)
-0.500
Length
1857 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFPYSPA EVAKVELVQF GILSPDEIRQ MSVVQIEHAE TMERGKPKPG GLSDPRLGTI DRKIKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADEDETK FKQALKIRNP KNRLKRIYDA CKSKKVCAGG DDLDVQEQDT DEPVKKRGGC GAQQPNITVD GMKMVAEFKA PKKKSDDQDQ
0201: LPEPVERKQI LSAERVLNVL KRISDEDCLL LGLNPKYARP DWMILQVLPV PPPPVRPSVM MDTSSRSEDD LTHQLAMIIR HNENLRRQER NGAPAHIITE
0301: FAQLLQFHIA TYFDNELPGQ PRATQRSGRP IKSICSRLKA KEGRIRGNLM GKRVDFSART VITPDPNINI DELGVPWSIA LNLTYPETVT PYNIERLKEL
0401: VEYGPHPPPG KTGAKYIIRE DGQRLDLRYV KKSSDQHLEL GYKVERHLND GDFVLFNRQP SLHKMSIMGH RIKIMPYSTF RLNLSVTSPY NADFDGDEMN
0501: MHVPQSFETR AEVLELMMVP KCIVSPQSNR PVMGIVQDTL LGCRKITKRD TLIEKDVFMN ILMWWQDFDG KIPAPAILKP RPIWTGKQVF NLIIPKQINL
0601: IRFSAWHSEE EKGFITPGDT MVRIEKGELL SGTLCKKSLG TGTGSLIHII WEEVGPDAAR KFLGHTQWLV NYWLLQNGFS IGIGDTIADA STMQTINDTI
0701: CKAKDEVKEL IKKAHEKQLE AEPGRTMMES FENRVNQVLN KARDDAGSSA QKSLSESNNL KAMVTAGSKG SFINISQMTA CVGQQNVEGK RIPFGFIDRT
0801: LPHFTKDDYG PESRGFVENS YLRGLTPQEF FFHAMGGREG LIDTAVKTSE TGYIQRRLVK AMEDIMVKYD GTVRNSLGDV IQFLYGEDGM DAVWIESQKL
0901: DSLKMKKPEF DNLFRYELDD ENWRPNYMLP EHVDDLKTIR EFRNVFEAEV QKLEADRYQL GTEIATTGDN SWPMPVNLKR LIWNAQKTFR IDFRRPSDMH
1001: PMEIVEAVDK LQERLKVVPG DDPMSIEAQK NATLFFNILL RSTFASKRVL KEYRLTKEAF EWVIGEIESR FLQSLVAPGE MIGCVAAQSI GEPATQMTLN
1101: TFHYAGVSAK NVTLGVPRLR EIINVAKKIK TPSLSVYLKP EVNQKKELAK NVQCALEYTT LRSVTHATEI WYDPDPLGTI IEEDAEFVQS YYEMPDEDID
1201: PDKISPWLLR IELNREMMVD KKLSMADIAD KINREFDDDL SCIFNDDNAD KLILRIRITN DEAPKGEIQD ESAEDDVFLK KIEGNMLTEM ALRGIPDINK
1301: VFIKEGKVNT FYQDEGFKAA NEWMLDTEGV NLLAVMCHED VDATRTTSNH LIEVIEVLGI EAVRRSLLDE LRVVISFDGS YVNYRHLAIL CDTMTYRGHL
1401: MAITRHGINR NDTGPLMRCS FEETVDILLD AAVYAESDHL RGVTENIMLG QLAPIGTGGC ALYLNDQMLQ QAIELQLPSY VEGLDFGMTP ARSPISGTPY
1501: HEGMMSPSYL LSPNIRASPI NTDASFSPYV GHMAFSPFPS PGGYSPSSGG YSPSSPVFTP EKGYSPLSPS YSPASPSYSP TSPSYTPGSP TYSPTSPNYS
1601: PTSPTYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPVYSPTSP AYSPTSPAYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPTSPS YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPSYSPTS PSYNPSSAKY SPSHAYSPSS PRMTPYSQTS PSYSPTSPTY SPTSPSYSQP
1801: SPSYSPTSPF NTSGGPSPDY SPTSPNYSPS GSYSPTAPGY SPSSTGQGND KDDESNR
0101: IMRCVCFNCS KILADEDETK FKQALKIRNP KNRLKRIYDA CKSKKVCAGG DDLDVQEQDT DEPVKKRGGC GAQQPNITVD GMKMVAEFKA PKKKSDDQDQ
0201: LPEPVERKQI LSAERVLNVL KRISDEDCLL LGLNPKYARP DWMILQVLPV PPPPVRPSVM MDTSSRSEDD LTHQLAMIIR HNENLRRQER NGAPAHIITE
0301: FAQLLQFHIA TYFDNELPGQ PRATQRSGRP IKSICSRLKA KEGRIRGNLM GKRVDFSART VITPDPNINI DELGVPWSIA LNLTYPETVT PYNIERLKEL
0401: VEYGPHPPPG KTGAKYIIRE DGQRLDLRYV KKSSDQHLEL GYKVERHLND GDFVLFNRQP SLHKMSIMGH RIKIMPYSTF RLNLSVTSPY NADFDGDEMN
0501: MHVPQSFETR AEVLELMMVP KCIVSPQSNR PVMGIVQDTL LGCRKITKRD TLIEKDVFMN ILMWWQDFDG KIPAPAILKP RPIWTGKQVF NLIIPKQINL
0601: IRFSAWHSEE EKGFITPGDT MVRIEKGELL SGTLCKKSLG TGTGSLIHII WEEVGPDAAR KFLGHTQWLV NYWLLQNGFS IGIGDTIADA STMQTINDTI
0701: CKAKDEVKEL IKKAHEKQLE AEPGRTMMES FENRVNQVLN KARDDAGSSA QKSLSESNNL KAMVTAGSKG SFINISQMTA CVGQQNVEGK RIPFGFIDRT
0801: LPHFTKDDYG PESRGFVENS YLRGLTPQEF FFHAMGGREG LIDTAVKTSE TGYIQRRLVK AMEDIMVKYD GTVRNSLGDV IQFLYGEDGM DAVWIESQKL
0901: DSLKMKKPEF DNLFRYELDD ENWRPNYMLP EHVDDLKTIR EFRNVFEAEV QKLEADRYQL GTEIATTGDN SWPMPVNLKR LIWNAQKTFR IDFRRPSDMH
1001: PMEIVEAVDK LQERLKVVPG DDPMSIEAQK NATLFFNILL RSTFASKRVL KEYRLTKEAF EWVIGEIESR FLQSLVAPGE MIGCVAAQSI GEPATQMTLN
1101: TFHYAGVSAK NVTLGVPRLR EIINVAKKIK TPSLSVYLKP EVNQKKELAK NVQCALEYTT LRSVTHATEI WYDPDPLGTI IEEDAEFVQS YYEMPDEDID
1201: PDKISPWLLR IELNREMMVD KKLSMADIAD KINREFDDDL SCIFNDDNAD KLILRIRITN DEAPKGEIQD ESAEDDVFLK KIEGNMLTEM ALRGIPDINK
1301: VFIKEGKVNT FYQDEGFKAA NEWMLDTEGV NLLAVMCHED VDATRTTSNH LIEVIEVLGI EAVRRSLLDE LRVVISFDGS YVNYRHLAIL CDTMTYRGHL
1401: MAITRHGINR NDTGPLMRCS FEETVDILLD AAVYAESDHL RGVTENIMLG QLAPIGTGGC ALYLNDQMLQ QAIELQLPSY VEGLDFGMTP ARSPISGTPY
1501: HEGMMSPSYL LSPNIRASPI NTDASFSPYV GHMAFSPFPS PGGYSPSSGG YSPSSPVFTP EKGYSPLSPS YSPASPSYSP TSPSYTPGSP TYSPTSPNYS
1601: PTSPTYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPVYSPTSP AYSPTSPAYS PTSPSYSPTS PSYSPTSPSY SPTSPSYSPT
1701: SPSYSPTSPS YSPTSPSYSP TSPAYSPTSP GYSPTSPSYS PTSPSYSPTS PSYNPSSAKY SPSHAYSPSS PRMTPYSQTS PSYSPTSPTY SPTSPSYSQP
1801: SPSYSPTSPF NTSGGPSPDY SPTSPNYSPS GSYSPTAPGY SPSSTGQGND KDDESNR
0001: METKMEIEFT KKPYIEDVGP LKIKSINFSV LSDLEVMKAA EVQVWNIGLY DHSFKPYENG LLDPRMGPPN KKSICTTCEG NFQNCPGHYG YLKLDLPVYN
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
0101: VGYFNFILDI LKCICKRCSN MLLDEKLYED HLRKMRNPRM EPLKKTELAK AVVKKCSTMA SQRIITCKKC GYLNGMVKKI AAQFGIGISH DRSKIHGGEI
0201: DECKSAISHT KQSTAAINPL TYVLDPNLVL GLFKRMSDKD CELLYIAYRP ENLIITCMLV PPLSIRPSVM IGGIQSNEND LTARLKQIIL GNASLHKILS
0301: QPTSSPKNMQ VWDTVQIEVA RYINSEVRGC QNQPEEHPLS GILQRLKGKG GRFRANLSGK RVEFTGRTVI SPDPNLKITE VGIPILMAQI LTFPECVSRH
0401: NIEKLRQCVR NGPNKYPGAR NVRYPDGSSR TLVGDYRKRI ADELAIGCIV DRHLQEGDVV LFNRQPSLHR MSIMCHRARI MPWRTLRFNE SVCNPYNADF
0501: DGDEMNMHVP QTEEARTEAI TLMGVQNNLC TPKNGEILVA STQDFLTSSF LITRKDTFYD RAAFSLICSY MGDGMDSIDL PTPTILKPIE LWTGKQIFSV
0601: LLRPNASIRV YVTLNVKEKN FKKGEHGFDE TMCINDGWVY FRNSELISGQ LGKATLGNGN KDGLYSILLR DYNSHAAAVC MNRLAKLSAR WIGIHGFSIG
0701: IDDVQPGEEL SKERKDSIQF GYDQCHRKIE EFNRGNLQLK AGLDGAKSLE AEITGILNTI REATGKACMS GLHWRNSPLI MSQCGSKGSP INISQMVACV
0801: GQQTVNGHRA PDGFIDRSLP HFPRMSKSPA AKGFVANSFY SGLTATEFFF HTMGGREGLV DTAVKTASTG YMSRRLMKAL EDLLVHYDNT VRNASGCILQ
0901: FTYGDDGMDP ALMEGKDGAP LNFNRLFLKV QATCPPRSHH TYLSSEELSQ KFEEELVRHD KSRVCTDAFV KSLREFVSLL GVKSASPPQV LYKASGVTDK
1001: QLEVFVKICV FRYREKKIEA GTAIGTIGAQ SIGEPGTQMT LKTFHFAGVA SMNITQGVPR INEIINASKN ISTPVISAEL ENPLELTSAR WVKGRIEKTT
1101: LGQVAESIEV LMTSTSASVR IILDNKIIEE ACLSITPWSV KNSILKTPRI KLNDNDIRVL DTGLDITPVV DKSRAHFNLH NLKNVLPNII VNGIKTVERV
1201: VVAEDMDKSK QIDGKTKWKL FVEGTNLLAV MGTPGINGRT TTSNNVVEVS KTLGIEAART TIIDEIGTVM GNHGMSIDIR HMMLLADVMT YRGEVLGIQR
1301: TGIQKMDKSV LMQASFERTG DHLFSAAASG KVDNIEGVTE CVIMGIPMKL GTGILKVLQR TDDLPKLKYG PDPIIS
Arabidopsis Description
NRPC1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.