Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G499000.1 | Wheat | nucleus | 96.86 | 96.17 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 90.09 | 91.91 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 88.83 | 88.58 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 89.1 | 87.42 |
| Zm00001d024583_P003 | Maize | nucleus | 87.29 | 85.73 |
| EES13372 | Sorghum | nucleus | 87.23 | 85.35 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 86.79 | 84.83 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.29 | 84.55 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 40.34 | 84.45 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 51.13 | 82.8 |
| KRH76591 | Soybean | nucleus | 82.22 | 81.77 |
| KRH28855 | Soybean | nucleus | 82.11 | 81.66 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.88 | 81.58 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.55 | 81.57 |
| KRH40807 | Soybean | nucleus | 78.7 | 80.7 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.72 | 80.68 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.32 | 80.61 |
| Bra010510.1-P | Field mustard | nucleus | 80.52 | 80.21 |
| AT4G35800.1 | Thale cress | nucleus | 80.85 | 79.88 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 61.42 | 79.26 |
| CDY71816 | Canola | cytosol | 11.94 | 76.14 |
| CDY08876 | Canola | nucleus | 67.58 | 75.85 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.41 | 71.25 |
| Bra011638.1-P | Field mustard | nucleus | 77.99 | 52.31 |
| CDX75527 | Canola | nucleus | 77.6 | 51.91 |
| CDX69166 | Canola | cytosol | 75.4 | 51.89 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 25.92 | 33.76 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 25.43 | 33.05 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 21.19 | 23.11 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 14.58 | 18.57 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 15.63 | 17.83 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 14.09 | 16.62 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 13.76 | 16.3 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 17.28 | 16.12 |
Protein Annotations
Description
No Description!
Coordinates
chr5B:+:665741302..665749702
Molecular Weight (calculated)
202417.0 Da
IEP (calculated)
6.561
GRAVY (calculated)
-0.436
Length
1817 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFAHSPA EAAKVQLVQF GILSPDEIRQ MSVAVIEHAE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: IMRCVCFNCS KILADKGNNK FKQALKIKNP KNRLRKIQEA CKSKKVCSAG EDDLEGQDTN EPVKKRGGCG AQQPKITVDG MKMVAEFKAT NKKNGDQDQL
0201: PEPVERKQIL SAERVLNVLK RISDEDCLLL GLDPKYARPD WMILQVLPIP PPPVRPSVMM DTYSRSEDDL THQLAMIIRH NENLRRQERN GVPAHIITEF
0301: AQLLQFHIAT YFDNDLPGQP RATQRSGRPI KSICSRLKAK EGRVRGNLMG KRVDFSARTV ITPDPNINID ELGVPWSIAL NLTYPETVTP YNIERLKELV
0401: EYGPHPPPGK TGAKYIIRED GQRLDLRYLK KSSDQHLELG YKVERHLVDG DFVLFNRQPS LHKMSIMGHR IKIMPYSTFR LNLSVTSPYN ADFDGDEMNM
0501: HVPQSFETRA EVLELMMVPK CIVSPQANKP VMGIVQDTLL GCRKITKRDT LIEKDVFMNI LMWWEDFDGK VPTPAILKPK PIWTGKQVFN LIIPKQINLI
0601: RFSAWHDADA EKESGYITPS DTMVRIEKGE LLSGILCKKT LGTSMGSLIH VIWEEVGPDA ARKFLGHTQW LVNYWLLQHG FSIGIGDTIA DAGTMKKIND
0701: TIADAKTAVN ELIKEAREKK LEPEPGRTMM ESFENRVNQV LNKARDDAGS SAQKSLSESN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFAG
0801: RTLPHFSQND NGPESRGFVQ NSYLRGLTPE EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIEPQ
0901: KLDSLGMKKA EFDKVFRHEL DDENWRPTYM SPEQADDLKT IRDIRIVFEV EIQKLEADRL QLGTEIATTG DITWPMPVNL KRLIWNAQKT FKIDLRRPSN
1001: MHPMEIVEAM DKLQERLKVV PGDDAMSIEA QKNATLLFNI LLRSTFASKR ILKEYRLTRE SFEWVIGEIE SRFHQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKK IKTPSLSVFL KPEVSKKKEL AKNVQCALEY TTLRSVTHAT EIWYDPDPLG TTIEEDVEFV KSYYEMPDED
1201: IDPDKLSPWL LRIELNREMM VDKRLSMAKI AEKIRHEFDD DLSCIFNDDN ADKLILRIRI KNDDETPKQD EDDDVFLKKV ESNMLTEMAL GGIADINKVF
1301: IKEKKVNKFD ENDGFTQTKE WMLDTEGVNL LAVMCHEDVD ATRTTSNHLI EVIEVLGIEA VRRSLLDELR VVISFDGSYV NYRHLAILCD TMTYRGHLMA
1401: ITRHGINRND TGPLMRCSFE ETVDILLDAA VYAESDYLRG VTENIMLGQL APIGTGGCGL YLNEEMLKQA IELQLPSYVE GLDYGCGMAS EHSPISGTPY
1501: HDGGMMSPVL SPNFRASPVT GAQFSPYVGG MAFSPVPSNY SQSYTSGPPS YSPTSLSYSP TSPIYSPVSP ICSPASTVYS PTSPVYSPTS LSYSPTSPVY
1601: SPTSPVYSRT SLAYSPTSPS YSPTSPLYSP TSPSYSPTLP SSYSPTSPGY SPTSPSYSPT SPNYSLTSPS YSPTSPNYNL TSPSYNPTSP NYCPAXXXYS
1701: PTSPNYCPTS VSYSPTSPNY CPTSPSYSPT SPSYCPRSPS YSPTSPSYSP SHAYSPSSPK MMSPYSEAPP NYSPASPTYS PTSPSYAQPS PSYSPTSLHT
1801: TSGGPSPDYS PTSPNYR
0101: IMRCVCFNCS KILADKGNNK FKQALKIKNP KNRLRKIQEA CKSKKVCSAG EDDLEGQDTN EPVKKRGGCG AQQPKITVDG MKMVAEFKAT NKKNGDQDQL
0201: PEPVERKQIL SAERVLNVLK RISDEDCLLL GLDPKYARPD WMILQVLPIP PPPVRPSVMM DTYSRSEDDL THQLAMIIRH NENLRRQERN GVPAHIITEF
0301: AQLLQFHIAT YFDNDLPGQP RATQRSGRPI KSICSRLKAK EGRVRGNLMG KRVDFSARTV ITPDPNINID ELGVPWSIAL NLTYPETVTP YNIERLKELV
0401: EYGPHPPPGK TGAKYIIRED GQRLDLRYLK KSSDQHLELG YKVERHLVDG DFVLFNRQPS LHKMSIMGHR IKIMPYSTFR LNLSVTSPYN ADFDGDEMNM
0501: HVPQSFETRA EVLELMMVPK CIVSPQANKP VMGIVQDTLL GCRKITKRDT LIEKDVFMNI LMWWEDFDGK VPTPAILKPK PIWTGKQVFN LIIPKQINLI
0601: RFSAWHDADA EKESGYITPS DTMVRIEKGE LLSGILCKKT LGTSMGSLIH VIWEEVGPDA ARKFLGHTQW LVNYWLLQHG FSIGIGDTIA DAGTMKKIND
0701: TIADAKTAVN ELIKEAREKK LEPEPGRTMM ESFENRVNQV LNKARDDAGS SAQKSLSESN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFAG
0801: RTLPHFSQND NGPESRGFVQ NSYLRGLTPE EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIEPQ
0901: KLDSLGMKKA EFDKVFRHEL DDENWRPTYM SPEQADDLKT IRDIRIVFEV EIQKLEADRL QLGTEIATTG DITWPMPVNL KRLIWNAQKT FKIDLRRPSN
1001: MHPMEIVEAM DKLQERLKVV PGDDAMSIEA QKNATLLFNI LLRSTFASKR ILKEYRLTRE SFEWVIGEIE SRFHQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKK IKTPSLSVFL KPEVSKKKEL AKNVQCALEY TTLRSVTHAT EIWYDPDPLG TTIEEDVEFV KSYYEMPDED
1201: IDPDKLSPWL LRIELNREMM VDKRLSMAKI AEKIRHEFDD DLSCIFNDDN ADKLILRIRI KNDDETPKQD EDDDVFLKKV ESNMLTEMAL GGIADINKVF
1301: IKEKKVNKFD ENDGFTQTKE WMLDTEGVNL LAVMCHEDVD ATRTTSNHLI EVIEVLGIEA VRRSLLDELR VVISFDGSYV NYRHLAILCD TMTYRGHLMA
1401: ITRHGINRND TGPLMRCSFE ETVDILLDAA VYAESDYLRG VTENIMLGQL APIGTGGCGL YLNEEMLKQA IELQLPSYVE GLDYGCGMAS EHSPISGTPY
1501: HDGGMMSPVL SPNFRASPVT GAQFSPYVGG MAFSPVPSNY SQSYTSGPPS YSPTSLSYSP TSPIYSPVSP ICSPASTVYS PTSPVYSPTS LSYSPTSPVY
1601: SPTSPVYSRT SLAYSPTSPS YSPTSPLYSP TSPSYSPTLP SSYSPTSPGY SPTSPSYSPT SPNYSLTSPS YSPTSPNYNL TSPSYNPTSP NYCPAXXXYS
1701: PTSPNYCPTS VSYSPTSPNY CPTSPSYSPT SPSYCPRSPS YSPTSPSYSP SHAYSPSSPK MMSPYSEAPP NYSPASPTYS PTSPSYAQPS PSYSPTSLHT
1801: TSGGPSPDYS PTSPNYR
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.