Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G174600.1 | Wheat | nucleus | 96.72 | 96.72 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 95.08 | 95.08 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 93.85 | 86.74 |
| EER89414 | Sorghum | nucleus | 80.74 | 80.74 |
| Os06t0215200-01 | Rice | nucleus | 78.69 | 79.01 |
| Zm00001d044917_P001 | Maize | nucleus | 76.64 | 76.02 |
| GSMUA_Achr10P... | Banana | nucleus | 49.59 | 63.02 |
| KRH71626 | Soybean | nucleus | 56.15 | 55.69 |
| KRH76336 | Soybean | nucleus | 55.33 | 54.66 |
| KRH33288 | Soybean | nucleus | 55.33 | 54.66 |
| AT1G49590.1 | Thale cress | nucleus | 53.69 | 54.13 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 56.56 | 53.7 |
| PGSC0003DMT400066376 | Potato | nucleus | 54.51 | 50.76 |
| CDY50960 | Canola | nucleus | 50.82 | 50.61 |
| CDY28102 | Canola | nucleus | 50.82 | 50.61 |
| Bra018814.1-P | Field mustard | nucleus | 50.82 | 50.41 |
| Solyc01g108430.2.1 | Tomato | nucleus | 54.1 | 50.38 |
Protein Annotations
| Gene3D:3.30.160.60 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003690 | GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0080188 | InterPro:IPR000690 | InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:Matrin/U1-like-C_Znf_C2H2 |
| PFAM:PF06220 | PFscan:PS50171 | PANTHER:PTHR13173 | PANTHER:PTHR13173:SF10 | SMART:SM00451 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:TraesCS7A01G173200 | EnsemblPlants:TraesCS7A01G173200.1 | InterPro:U1-CZ_Znf_C2H2 | InterPro:Znf_C2H2_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr7A:-:127674128..127677617
Molecular Weight (calculated)
27141.8 Da
IEP (calculated)
9.994
GRAVY (calculated)
-0.982
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEYWVSQGN KWCDLCKIFI SNNPFSIRTH ELGKRHKDNV TQRLSTMQKD GAAKEKEQQQ AAKALQLIEA KAKKSYQKDL ENNQRNTDGD SSAAPGEGWV
101: FDSTSGYYYD QATGLYYDSN SGFYYSDGLG KWVTQEEAYK WAETSRTNLA QSSTSQPKTP SGGGPVAGIK GGPTPGVVVK KPLNPMRAVK GAPSALAANK
201: RKREDTKKPK VVSKEEEAAL RAREAARKRV EDREKPLMGL YKTY
101: FDSTSGYYYD QATGLYYDSN SGFYYSDGLG KWVTQEEAYK WAETSRTNLA QSSTSQPKTP SGGGPVAGIK GGPTPGVVVK KPLNPMRAVK GAPSALAANK
201: RKREDTKKPK VVSKEEEAAL RAREAARKRV EDREKPLMGL YKTY
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.