Factsheet for TraesCS7A01G325300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G173400.1
TraesCS1B01G191000.1
TraesCS1D01G165400.1
TraesCS6A01G235900.1
TraesCS6B01G264900.1
TraesCS6D01G218900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	TraesCS1A01G173400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1B01G191000.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS1D01G165400.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6A01G235900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6B01G264900.1	AT5G52240.1	21798944
AT5G06160.1	TraesCS6D01G218900.1	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G226000.1	Wheat	cytosol	86.9	96.05
HORVU3Hr1G063220.1	Barley	plasma membrane	91.47	93.7
TraesCS3A01G266200.2	Wheat	nucleus	92.46	93.57
EES01272	Sorghum	nucleus	84.92	84.92
EES10918	Sorghum	nucleus	84.33	84.33
Zm00001d043843_P001	Maize	plasma membrane	83.93	83.93
Os03t0717600-01	Rice	nucleus	84.13	83.63
TraesCS7D01G321900.1	Wheat	cytosol	76.39	83.33
VIT_16s0098g00320.t01	Wine grape	nucleus	71.43	70.73
GSMUA_AchrUn_...	Banana	nucleus	70.24	69.82
PGSC0003DMT400023451	Potato	nucleus	69.44	68.76
Solyc03g083430.2.1	Tomato	nucleus	69.05	68.37
AT5G06160.1	Thale cress	nucleus	63.69	63.69
CDY14090	Canola	nucleus	62.9	62.65
CDY04981	Canola	nucleus	62.7	62.45
Bra028740.1-P	Field mustard	nucleus	62.7	62.45
KRH53478	Soybean	nucleus	60.12	59.53
KRH64470	Soybean	nucleus	60.12	59.53
Zm00001d019339_P001	Maize	cytosol	12.1	59.22
CDY11356	Canola	nucleus	59.33	58.4
Bra005882.1-P	Field mustard	nucleus	59.33	58.4
CDX80990	Canola	nucleus	58.13	57.45
GSMUA_Achr4P08530_001	Banana	cytosol	5.75	51.79
CDY52753	Canola	mitochondrion	20.24	49.76
CDY07585	Canola	nucleus	23.81	48.19
Bra003140.1-P	Field mustard	cytosol	22.62	47.3
GSMUA_Achr4P16730_001	Banana	extracellular	8.93	43.69

Protein Annotations

MapMan:16.4.1.2.3.3	ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	PFAM:PF11931
PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3
InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	EnsemblPlantsGene:TraesCS7A01G325300	EnsemblPlants:TraesCS7A01G325300.2	SEG:seg	:

Description

No Description!

Coordinates

chr7A:-:473615103..473622152

Molecular Weight (calculated)

59513.2 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.819

Length

504 amino acids

Sequence
(BLAST)

001: MASSVLEATR AAHEDIERLE RLVVRELQRD PANARDRLFQ SHRVRHMLDL VISTSDKLVE IYEDKDGARK DEISSHLTAP VQSDIFPKYY ERLKEIRDYH
101: RRNHSARFIS ETDDYEELLK EEPAIEFTGL FDSSCRITVL CMEAFGRYLD LHELYNEFIN SKFGSLMEYS AYVGTFAQTE KILHSLKATR QYKEYLEHIL
201: EYLMSFMYRT EPLQDIDKIF TKLQSEFEEQ WANGEVPGWE NKGTEKKSES QESAVDLDYY NIVEELVELG PEKLKEALTA RGLKGGGTVQ QRAERLFLLK
301: HTPLEQLDRK HFAKGDDLKK EIALVEVKMK RLCEILDEVI VRTKENAEKK LTLTYEEMEA EREEEEVQAD SESDDEDQQI YNPLKLPMGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNHSYW GRRDYERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKA LWERIQAKQG LNKWRPDLEE EYEDKDGNIY NKKTYTDLQR
501: QGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.