Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019339_P001 | Maize | cytosol | 39.29 | 21.36 |
| GSMUA_Achr4P16760_001 | Banana | cytosol | 42.86 | 16.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.29 | 7.1 |
| HORVU3Hr1G063220.1 | Barley | plasma membrane | 53.57 | 6.1 |
| EES10918 | Sorghum | nucleus | 53.57 | 5.95 |
| TraesCS7B01G226000.1 | Wheat | cytosol | 48.21 | 5.92 |
| Os03t0717600-01 | Rice | nucleus | 53.57 | 5.92 |
| TraesCS3B01G299500.1 | Wheat | nucleus | 51.79 | 5.89 |
| TraesCS3A01G266200.2 | Wheat | nucleus | 51.79 | 5.82 |
| TraesCS3D01G266300.2 | Wheat | nucleus | 51.79 | 5.82 |
| EES01272 | Sorghum | nucleus | 51.79 | 5.75 |
| TraesCS7A01G325300.2 | Wheat | cytosol | 51.79 | 5.75 |
| Zm00001d043843_P001 | Maize | plasma membrane | 51.79 | 5.75 |
| TraesCS7D01G321900.1 | Wheat | cytosol | 44.64 | 5.41 |
| GSMUA_Achr4P16740_001 | Banana | cytosol | 3.57 | 4.08 |
| GSMUA_Achr4P16730_001 | Banana | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P08530_001 | EnsemblPlants:GSMUA_Achr4T08530_001 | EnsemblPlantsGene:GSMUA_Achr4G08530_001 | UniParc:UPI000294A77C | UniProt:M0SM70 | MapMan:35.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G08530_001]
Coordinates
chr4:+:6267263..6267433
Molecular Weight (calculated)
6227.2 Da
IEP (calculated)
5.006
GRAVY (calculated)
-0.793
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSNLLGVTR SGHEDVEWLE RLIVRELQRE PANDRDRHLE KADGIACKPA GSADPS
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
Arabidopsis Description
ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.