Factsheet for HORVU3Hr1G063220.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G045630.3
HORVU6Hr1G060500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	HORVU1Hr1G045630.3	AT5G52240.1	21798944
AT5G06160.1	HORVU6Hr1G060500.1	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G299500.1	Wheat	nucleus	96.34	96.34
TraesCS3D01G266300.2	Wheat	nucleus	96.34	95.18
TraesCS3A01G266200.2	Wheat	nucleus	95.94	94.78
TraesCS7B01G226000.1	Wheat	cytosol	86.59	93.42
TraesCS7A01G325300.2	Wheat	cytosol	93.7	91.47
EES01272	Sorghum	nucleus	87.4	85.32
EES10918	Sorghum	nucleus	87.4	85.32
Os03t0717600-01	Rice	nucleus	87.8	85.21
Zm00001d043843_P001	Maize	plasma membrane	86.79	84.72
TraesCS7D01G321900.1	Wheat	cytosol	74.8	79.65
VIT_16s0098g00320.t01	Wine grape	nucleus	73.98	71.51
GSMUA_AchrUn_...	Banana	nucleus	72.15	70.02
PGSC0003DMT400023451	Potato	nucleus	70.94	68.57
Solyc03g083430.2.1	Tomato	nucleus	70.73	68.37
AT5G06160.1	Thale cress	nucleus	65.65	64.09
CDY14090	Canola	nucleus	65.04	63.24
Zm00001d019339_P001	Maize	cytosol	13.21	63.11
CDY04981	Canola	nucleus	64.63	62.85
Bra028740.1-P	Field mustard	nucleus	64.63	62.85
KRH53478	Soybean	nucleus	62.6	60.51
KRH64470	Soybean	nucleus	62.6	60.51
CDY11356	Canola	nucleus	60.37	58.01
Bra005882.1-P	Field mustard	nucleus	60.16	57.81
CDX80990	Canola	nucleus	59.76	57.65
GSMUA_Achr4P08530_001	Banana	cytosol	6.1	53.57
CDY52753	Canola	mitochondrion	21.14	50.73
CDY07585	Canola	nucleus	24.8	49.0
Bra003140.1-P	Field mustard	cytosol	23.58	48.13
GSMUA_Achr4P16730_001	Banana	extracellular	9.15	43.69

Protein Annotations

MapMan:16.4.1.2.3.3	UniProt:A0A287LB73	ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G063220	EnsemblPlants:HORVU3Hr1G063220.1	InterPro:IPR000690	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931
PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2
InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	UniParc:UPI000B47852C	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:-:482724652..482734251

Molecular Weight (calculated)

58095.2 Da

IEP (calculated)

4.868

GRAVY (calculated)

-0.868

Length

492 amino acids

Sequence
(BLAST)

001: MASSVLEATR AAHEDLERLE RLAVRELQRE PANARDRLFQ SHRVRHMLDL VVSTSDKLVE IYEDKDGARK DEMSTHLTAP VQIDIFPKYY ERLKEIRDYH
101: RRNQSARFVS ESDDYEELLK EEPTIEFTGE EAFGRYLDLH ELYNEFINSK FGSLLEYSAY VGTFAQTEKI AHNLKATRPY KEYLEHILEY LTSFLYRTEP
201: LQDIEKIFTK LESEFEEQWA NGEVPGWENK DSEKESVLHE SAVDLDYYST VEELVELGPE KLKEALTARG LKGGGTVQQR AERLFLLKHT PLEQLDRKHF
301: AKGDDLKKEI ALIEVKMKRL CEILDEVIVR TKENAEKKLT LTYEEMEAER EEEEVQADSE SDDEDQQIYN PLKLPMGWDG KPIPYWLYKL HGLGQEFKCE
401: ICGNHSYWGR RAYERHFKEW RHQHGMRCLG IPNTKNFNEI TSIEEAKALW ERIQSKQGLN KWRPDLEEEY EDKDGNIYNK KTYTDLQRQG LI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.