Factsheet for Bra005882.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra028301.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	Bra028301.1-P	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11356	Canola	nucleus	98.24	98.24
Bra028740.1-P	Field mustard	nucleus	85.16	86.17
AT5G06160.1	Thale cress	nucleus	77.93	79.17
VIT_16s0098g00320.t01	Wine grape	nucleus	67.97	68.37
PGSC0003DMT400023451	Potato	nucleus	67.38	67.78
Solyc03g083430.2.1	Tomato	nucleus	66.99	67.39
TraesCS3B01G299500.1	Wheat	nucleus	58.01	60.37
HORVU3Hr1G063220.1	Barley	plasma membrane	57.81	60.16
Os03t0717600-01	Rice	nucleus	59.57	60.16
TraesCS7B01G226000.1	Wheat	cytosol	53.52	60.09
TraesCS3A01G266200.2	Wheat	nucleus	58.2	59.84
TraesCS3D01G266300.2	Wheat	nucleus	58.01	59.64
KRH64470	Soybean	nucleus	59.18	59.53
TraesCS7A01G325300.2	Wheat	cytosol	58.4	59.33
KRH53478	Soybean	nucleus	58.79	59.14
Zm00001d043843_P001	Maize	plasma membrane	58.2	59.13
EES01272	Sorghum	nucleus	58.2	59.13
EES10918	Sorghum	nucleus	58.01	58.93
GSMUA_Achr4P16740_001	Banana	cytosol	5.47	57.14
Bra003140.1-P	Field mustard	cytosol	25.0	53.11
TraesCS7D01G321900.1	Wheat	cytosol	43.75	48.48
Zm00001d019339_P001	Maize	cytosol	7.81	38.84

Protein Annotations

MapMan:16.4.1.2.3.3	EnsemblPlantsGene:Bra005882	EnsemblPlants:Bra005882.1	EnsemblPlants:Bra005882.1-P	ncoils:Coil	InterPro:DUF3449
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	InterPro:IPR000690	UniProt:M4CNU4	InterPro:Matrin/U1-C_Znf_C2H2
PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786
PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	UniParc:UPI000253F5E0	SEG:seg

Description

AT5G06160 (E=1e-212) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding

Coordinates

chrA03:-:1042412..1045341

Molecular Weight (calculated)

59012.9 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.776

Length

512 amino acids

Sequence
(BLAST)

001: MSSTLLDQIR CNHEEIERLE RLVVQDLQTH PSSSKDRLVQ GHRIRNTIHS IMRAIEKLVE TYEDKDGARD DEIAALGGHT ATGVNVYSAF YDRLKEIREY
101: HRKYPSGPLA DATADYEALL QVKPVISFSG EEGVGRYLDL HDMYNQYINS KFGDRVEYSA YLDVFSHPEK IPCKLKLSRQ YMKYMEALLE YLVNFFQRTE
201: PLQDLDKMLS KVETDFEEQF ADGKVIGWES HGQESKLVPS EHTVIDFGYY TTVDELIGVG PEKLKEALGA LGLKVGGTLQ QRAERLFLIK NTPLEKLDKK
301: HFAKPALKGN QNGDAKAMQG ADSSAKQIAL TEAKVKKLCN LLDETIERTK QNVVKKQAMT YEEMEEEHKG EEERAEIESD DEEEEGGFYN PLNLPMGVDG
401: KPIPYWLYKL HGLGQKFKCE ICRNKIYKGR RAFERHFKES QHQDGMRCLG IPNTKNFNEI TSIEEAKELW KRIQERQGVN KWRPEVEEEY EDGDGNVYNK
501: KTYSDLKRQG LI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.