Factsheet for Zm00001d043843_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013914_P001
Zm00001d017380_P001
Zm00001d032531_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	Zm00001d013914_P001	AT5G52240.1	21798944
AT5G06160.1	Zm00001d017380_P001	AT5G52240.1	21798944
AT5G06160.1	Zm00001d032531_P001	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01272	Sorghum	nucleus	96.23	96.23
TraesCS3B01G299500.1	Wheat	nucleus	84.72	86.79
HORVU3Hr1G063220.1	Barley	plasma membrane	84.72	86.79
TraesCS7B01G226000.1	Wheat	cytosol	77.58	85.75
TraesCS3D01G266300.2	Wheat	nucleus	84.72	85.74
TraesCS3A01G266200.2	Wheat	nucleus	84.52	85.54
TraesCS7A01G325300.2	Wheat	cytosol	83.93	83.93
Os03t0717600-01	Rice	nucleus	83.73	83.23
TraesCS7D01G321900.1	Wheat	cytosol	66.87	72.94
GSMUA_AchrUn_...	Banana	nucleus	71.83	71.4
VIT_16s0098g00320.t01	Wine grape	nucleus	71.63	70.92
PGSC0003DMT400023451	Potato	nucleus	69.84	69.16
Solyc03g083430.2.1	Tomato	nucleus	69.64	68.96
Zm00001d019339_P001	Maize	cytosol	13.29	65.05
AT5G06160.1	Thale cress	nucleus	64.48	64.48
CDY14090	Canola	nucleus	63.89	63.64
Bra028740.1-P	Field mustard	nucleus	63.69	63.44
CDY04981	Canola	nucleus	63.49	63.24
KRH64470	Soybean	nucleus	61.9	61.3
KRH53478	Soybean	nucleus	61.71	61.1
CDY11356	Canola	nucleus	59.33	58.4
Bra005882.1-P	Field mustard	nucleus	59.13	58.2
CDX80990	Canola	nucleus	58.13	57.45
GSMUA_Achr4P08530_001	Banana	cytosol	5.75	51.79
CDY52753	Canola	mitochondrion	20.83	51.22
CDY07585	Canola	nucleus	24.01	48.59
Bra003140.1-P	Field mustard	cytosol	22.42	46.89
GSMUA_Achr4P16730_001	Banana	extracellular	9.52	46.6

Protein Annotations

EntrezGene:100217051	MapMan:16.4.1.2.3.3	UniProt:B4FL42	EMBL:BT037830	ncoils:Coil	InterPro:DUF3449
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	InterPro:IPR000690	InterPro:Matrin/U1-C_Znf_C2H2	ProteinID:ONM39221.1
PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PFscan:PS50171	PANTHER:PTHR12786
PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	UniParc:UPI00017B6A77	EnsemblPlantsGene:Zm00001d043843
EnsemblPlants:Zm00001d043843_P001	EnsemblPlants:Zm00001d043843_T001	SEG:seg	:	:	:

Description

Splicing factor SF3a60 homolog

Coordinates

chr3:-:211643667..211669331

Molecular Weight (calculated)

59328.8 Da

IEP (calculated)

5.118

GRAVY (calculated)

-0.875

Length

504 amino acids

Sequence
(BLAST)

001: MASTVLEATR AAHEDLERLE RLAVSELQRE PANPRDRLFQ SHRVRHMLDL VVSTSGKLVE IYEDKDNARK DEINTHLTAP TQSGLFSKYY ERLKEIREYH
101: RRNPSARFVS TTDDYEELLK EEPVIEFTGE ETFGRYLDLH ELYNEFINSK FGTLMEYSAY VGCFSQTDKI SHSHKATRKY REYLEHILEY LTSFLYRTEP
201: LQDIDKIFLK LESEFEEQWA NEGILGWGNK GTEKESEIDL DYYSTVEELV ELGPEKLKQA LAARGLKSGG TVQQRADRLF LLKVTPLEQL DRKHFAKVPH
301: TKDGSNTAPN GNAFKEDMKK EIALMEVKMK RLCELLDEAF VRTKENAEKK LTLTYEEMEA EREEEEVQVD TESDDEEQQI YNPLKLPMGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNHSYW GRRAYERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKA LWEKIQARQG VNKWRPDLEE EYEDQEGNIY NKKTYTDLQR
501: QGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.