CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00522
CDY61583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	CDY00522	AT5G52240.1	21798944
AT5G06160.1	CDY61583	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028740.1-P	Field mustard	nucleus	98.02	98.02
CDY04981	Canola	nucleus	97.83	97.83
CDX80990	Canola	nucleus	85.38	84.71
CDY11356	Canola	nucleus	85.57	84.57
AT5G06160.1	Thale cress	nucleus	82.61	82.94
VIT_16s0098g00320.t01	Wine grape	nucleus	73.91	73.48
PGSC0003DMT400023451	Potato	nucleus	72.73	72.3
Solyc03g083430.2.1	Tomato	nucleus	72.53	72.1
HORVU3Hr1G063220.1	Barley	plasma membrane	63.24	65.04
TraesCS3B01G299500.1	Wheat	nucleus	62.85	64.63
Os03t0717600-01	Rice	nucleus	64.23	64.1
TraesCS3A01G266200.2	Wheat	nucleus	63.04	64.06
KRH64470	Soybean	nucleus	64.43	64.05
EES01272	Sorghum	nucleus	63.64	63.89
Zm00001d043843_P001	Maize	plasma membrane	63.64	63.89
TraesCS3D01G266300.2	Wheat	nucleus	62.85	63.86
KRH53478	Soybean	nucleus	64.23	63.85
EES10918	Sorghum	nucleus	63.44	63.69
TraesCS7B01G226000.1	Wheat	cytosol	57.11	63.38
GSMUA_Achr4P16740_001	Banana	cytosol	6.13	63.27
TraesCS7A01G325300.2	Wheat	cytosol	62.65	62.9
CDY07585	Canola	nucleus	29.84	60.64
CDY52753	Canola	mitochondrion	24.51	60.49
TraesCS7D01G321900.1	Wheat	cytosol	47.63	52.16
Zm00001d019339_P001	Maize	cytosol	8.89	43.69

Protein Annotations

MapMan:16.4.1.2.3.3	GO:A0A078FI39	UniProt:A0A078FI39	EnsemblPlants:CDY14090	ProteinID:CDY14090	ProteinID:CDY14090.1
ncoils:Coil	InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00078629001
InterPro:IPR000690	InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837
PFscan:PS50171	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd
UniParc:UPI0004EE9902	SEG:seg	:	:	:	:

Description

BnaC02g02070DBnaC02g02070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI39]

Coordinates

chrLK032040:+:390282..393392

Molecular Weight (calculated)

58956.5 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.857

Length

506 amino acids

Sequence
(BLAST)

001: MSSTLLEQTR SNHEEIERLE RIIVQDLQTE PPSSKDRLVQ GHRVRNMIQS IMRTTEKLVE TYEDKDGARE DEIAALGGHT ATGINVYSAF YDRLKEIREY
101: HRKYPSGPLV DASADYEALL KVEPVISFSG EEGAGRYLDL HDLYNQYINS KFGERVEYSV YLDVFSQPEK IPRKLKFSRQ YKKYMEALLE YLVNFFQRTE
201: PLQDLDKMLS KVETDFEEQF AEGKVVGWEN HGQENEPHPQ HSVIDLDYYI TAEELIEVGP EKLKEALGAL GLKVGGTLQQ RAERLFLTKD TPLEKLDKKH
301: FAKPIVKQNG DAKATQEPDS GKQIALTEAK VKKLCSLLDE TIVRTKQNIV KKQALTYEEM EEEREGEEER AEEESDDEEG DFYNPLKLPM GWDGKPIPYW
401: LYKLHGLGQK FECEICGNSV YMGRRAFERH FKEFQHQHGM RCLGIPNTKN FNEITSIEEA KELWKKIQER QGVNKWRPEL EEEYEDREGN IYNKKTYSDL
501: QRQGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.