CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00522
CDY61583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	CDY00522	AT5G52240.1	21798944
AT5G06160.1	CDY61583	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003140.1-P	Field mustard	cytosol	89.56	92.53
CDY52753	Canola	mitochondrion	73.49	89.27
Zm00001d019339_P001	Maize	cytosol	14.06	33.98
AT5G06160.1	Thale cress	nucleus	61.04	30.16
CDY14090	Canola	nucleus	60.64	29.84
CDY04981	Canola	nucleus	60.24	29.64
CDX80990	Canola	nucleus	55.82	27.25
CDY11356	Canola	nucleus	55.82	27.15
VIT_16s0098g00320.t01	Wine grape	nucleus	54.22	26.52
KRH53478	Soybean	nucleus	53.41	26.13
KRH64470	Soybean	nucleus	53.01	25.93
PGSC0003DMT400023451	Potato	nucleus	52.61	25.74
Solyc03g083430.2.1	Tomato	nucleus	52.61	25.74
HORVU3Hr1G063220.1	Barley	plasma membrane	49.0	24.8
TraesCS3B01G299500.1	Wheat	nucleus	48.59	24.59
Os03t0717600-01	Rice	nucleus	49.8	24.46
TraesCS3A01G266200.2	Wheat	nucleus	48.59	24.3
TraesCS3D01G266300.2	Wheat	nucleus	48.59	24.3
EES10918	Sorghum	nucleus	49.0	24.21
EES01272	Sorghum	nucleus	49.0	24.21
TraesCS7B01G226000.1	Wheat	cytosol	44.18	24.12
Zm00001d043843_P001	Maize	plasma membrane	48.59	24.01
TraesCS7A01G325300.2	Wheat	cytosol	48.19	23.81
TraesCS7D01G321900.1	Wheat	cytosol	32.13	17.32
GSMUA_Achr4P16740_001	Banana	cytosol	0.8	4.08

Protein Annotations

MapMan:35.1	GO:A0A078EZS4	UniProt:A0A078EZS4	EnsemblPlants:CDY07585	ProteinID:CDY07585	ProteinID:CDY07585.1
InterPro:DUF3449	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00124671001	PFAM:PF11931	PANTHER:PTHR12786
PANTHER:PTHR12786:SF2	InterPro:SF3A3	UniParc:UPI0004EDDB5A	SEG:seg	:	:

Description

BnaC06g14790DBnaC06g14790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EZS4]

Coordinates

chrLK031979:-:900682..901431

Molecular Weight (calculated)

29797.7 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.920

Length

249 amino acids

Sequence
(BLAST)

001: MMSSSVLEQT RSRHEEIERL ERLIVEELRK TTEPASGMER LVKGHRVRNM VQSIMLKTKK LVETYEDKDR TMETEIAMLG ETDLFYDRLE EIREYHRKLH
101: LSGHLVDDDD DDASEDYIAL VTKEVPVIAF SEEEGFEKKQ GLTFKEMEEE RERDQNACAK LRVYHPHWLK NLRELQHEFK CEICGNRRYK GRRGFKMHFK
201: EAQHQRGMRL LGIPSTNSLK EITTIDEAEE LWRRIKRQGM CIWRPELEE

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.