Factsheet for Bra003140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra028301.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	Bra028301.1-P	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07585	Canola	nucleus	92.53	89.56
CDY52753	Canola	mitochondrion	73.44	86.34
Zm00001d019339_P001	Maize	cytosol	14.11	33.01
AT5G06160.1	Thale cress	nucleus	59.75	28.57
Bra028740.1-P	Field mustard	nucleus	58.51	27.87
Bra005882.1-P	Field mustard	nucleus	53.11	25.0
VIT_16s0098g00320.t01	Wine grape	nucleus	52.7	24.95
KRH53478	Soybean	nucleus	52.28	24.75
KRH64470	Soybean	nucleus	51.45	24.36
Solyc03g083430.2.1	Tomato	nucleus	51.04	24.16
PGSC0003DMT400023451	Potato	nucleus	51.04	24.16
HORVU3Hr1G063220.1	Barley	plasma membrane	48.13	23.58
TraesCS7B01G226000.1	Wheat	cytosol	44.4	23.46
TraesCS3B01G299500.1	Wheat	nucleus	47.72	23.37
TraesCS3A01G266200.2	Wheat	nucleus	47.72	23.09
TraesCS3D01G266300.2	Wheat	nucleus	47.72	23.09
Os03t0717600-01	Rice	nucleus	48.13	22.88
EES01272	Sorghum	nucleus	47.72	22.82
TraesCS7A01G325300.2	Wheat	cytosol	47.3	22.62
EES10918	Sorghum	nucleus	47.3	22.62
Zm00001d043843_P001	Maize	plasma membrane	46.89	22.42
TraesCS7D01G321900.1	Wheat	cytosol	29.88	15.58
GSMUA_Achr4P16740_001	Banana	cytosol	0.83	4.08

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra003140	EnsemblPlants:Bra003140.1	EnsemblPlants:Bra003140.1-P	InterPro:DUF3449	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:M4CG08	PFAM:PF11931	PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3
UniParc:UPI00025413B4	SEG:seg	:	:	:	:

Description

AT5G06160 (E=5e-026) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding

Coordinates

chrA07:+:11551200..11551925

Molecular Weight (calculated)

28859.5 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.888

Length

241 amino acids

Sequence
(BLAST)

001: MTSSSLLEQT RSRHEEIERL ERLIVEELRK TTEPASGMER LVKGHRVRNM VQSIMLKTNK LVETYEDKDR TMETEIAMLG ETYLFYHRLE EMRECHRKLH
101: LSGHLVDDND ASEDYIALVT KEVPVIAFSE EEGLTYKEME KERERDQEAY AKSRVYHPHW LKNLRELQHE FKCEICGNQS YKGRRSFKMH FKEAQHQRGM
201: RLLGIPSTNS LKEVTTIDEA EELWRRIKWQ GMCIWRPELE E

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.