CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91417
EES05839

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06160.1	EER91417	AT5G52240.1	21798944
AT5G06160.1	EES05839	AT5G52240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043843_P001	Maize	plasma membrane	96.23	96.23
EES10918	Sorghum	nucleus	96.03	96.03
TraesCS3B01G299500.1	Wheat	nucleus	85.71	87.8
HORVU3Hr1G063220.1	Barley	plasma membrane	85.32	87.4
TraesCS7B01G226000.1	Wheat	cytosol	78.57	86.84
TraesCS3D01G266300.2	Wheat	nucleus	85.71	86.75
TraesCS3A01G266200.2	Wheat	nucleus	85.52	86.55
TraesCS7A01G325300.2	Wheat	cytosol	84.92	84.92
Os03t0717600-01	Rice	nucleus	84.92	84.42
TraesCS7D01G321900.1	Wheat	cytosol	68.06	74.24
GSMUA_AchrUn_...	Banana	nucleus	72.02	71.6
VIT_16s0098g00320.t01	Wine grape	nucleus	71.63	70.92
PGSC0003DMT400023451	Potato	nucleus	70.44	69.74
Solyc03g083430.2.1	Tomato	nucleus	70.04	69.35
AT5G06160.1	Thale cress	nucleus	64.68	64.68
CDY14090	Canola	nucleus	63.89	63.64
Bra028740.1-P	Field mustard	nucleus	63.69	63.44
CDY04981	Canola	nucleus	63.49	63.24
KRH53478	Soybean	nucleus	62.1	61.49
KRH64470	Soybean	nucleus	61.71	61.1
CDY11356	Canola	nucleus	59.33	58.4
Bra005882.1-P	Field mustard	nucleus	59.13	58.2
CDX80990	Canola	nucleus	58.53	57.84
GSMUA_Achr4P08530_001	Banana	cytosol	5.75	51.79
CDY52753	Canola	mitochondrion	21.03	51.71
CDY07585	Canola	nucleus	24.21	49.0
Bra003140.1-P	Field mustard	cytosol	22.82	47.72
GSMUA_Achr4P16730_001	Banana	extracellular	9.13	44.66

Protein Annotations

MapMan:16.4.1.2.3.3	EntrezGene:8068027	UniProt:C5XGS1	ncoils:Coil	InterPro:DUF3449	EnsemblPlants:EES01272
ProteinID:EES01272	ProteinID:EES01272.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	InterPro:IPR000690
InterPro:Matrin/U1-C_Znf_C2H2	PFAM:PF11931	PFAM:PF12108	PFAM:PF13297	PFAM:PF16837	PFscan:PS50171
PANTHER:PTHR12786	PANTHER:PTHR12786:SF2	InterPro:SF3A3	InterPro:SF3A3_dom	InterPro:SF3a60_bindingd	EnsemblPlantsGene:SORBI_3003G258900
unigene:Sbi.1720	UniParc:UPI0001A8465F	RefSeq:XP_002456152.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:59692454..59701058

Molecular Weight (calculated)

59279.6 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.907

Length

504 amino acids

Sequence
(BLAST)

001: MASTVLEATR AAHEDLERLE RLAVRELQRD PANPRDRLFQ SHRVRHMLDL VVSTSGKLVE IYEDKDNARK DEINTHLTAP TQSGLFSKYY ERLKEIREYH
101: RRNPSARFVS TTDDYEELLK EEPIIEFTGE ESFGRYLDLH ELYNEFINSK FGTPMEYSAY VGCFSQTDKI SHSHKATRQY REYLEHILEY LTSFLYRTEP
201: LQDIDKIFLK LESEFEERWA NGEIPGWGNK GAEKESEIDL DYYSTVEELV ELGPEKLKQA LAARGLKSGG TVQQRADRLF LLKLTPLEQL DRKHFAKVPH
301: TKDGSNTASN GNTLKDDMKK EIALMEVKMK RLCELLDEAF VRTKENAEKK LTLTYEEMEA EREEEEVQAD SESDDEEQQI YNPLKLPMGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNHSYW GRRAYERHFK EWRHQHGMRC LGIPNTKNFN EITSIDEAKA LWEKIQARQG VNKWRPDLEE EYEDQEGNIY NKKTYTDLQR
501: QGLI

Best Arabidopsis Sequence Match ( AT5G06160.1 )
(BLAST)

001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI

Arabidopsis Description

ATOSplicing factor SF3a60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FG01]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.