CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3
mitochondrion 1
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G173400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	70.85	84.49
Os10t0502600-01	Rice	plasma membrane, plastid	77.58	74.57
TraesCS1B01G191000.1	Wheat	golgi	73.09	72.44
HORVU1Hr1G045630.3	Barley	plasma membrane	74.89	72.29
TraesCS1D01G165400.1	Wheat	plastid	72.2	71.56
KRH09074	Soybean	endoplasmic reticulum	60.09	60.36
KRH38500	Soybean	endoplasmic reticulum	59.19	60.0
AT5G52240.1	Thale cress	endoplasmic reticulum	57.4	58.18
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	66.82	57.75
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	55.61	56.88
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	55.16	56.42
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	55.16	56.42
GSMUA_Achr11P...	Banana	plasma membrane	66.37	55.64
EES05944	Sorghum	cytosol, nucleus, plastid	23.32	50.49
EER94942	Sorghum	endoplasmic reticulum	39.46	42.93
EER93976	Sorghum	plastid	48.88	42.08
Zm00001d032531_P001	Maize	plasma membrane	75.78	41.32
EES05839	Sorghum	plastid	57.85	35.73
EER95310	Sorghum	endoplasmic reticulum, golgi	22.87	21.52

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	EntrezGene:8067084	UniProt:C5WWE9	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
EnsemblPlants:EER91417	ProteinID:EER91417	ProteinID:EER91417.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	InterPro:IPR001199
InterPro:IPR036400	PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF64	SMART:SM01117	EnsemblPlantsGene:SORBI_3001G202400
SUPFAM:SSF55856	unigene:Sbi.5803	TMHMM:TMhelix	UniParc:UPI0001A8248B	RefSeq:XP_002464419.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:18412236..18415012

Molecular Weight (calculated)

23985.2 Da

IEP (calculated)

4.202

GRAVY (calculated)

-0.379

Length

223 amino acids

Sequence
(BLAST)

001: MAVAELWETL KQAIVAYTGL SPAAFFTAVA VAAALYHVVS GLFAAPPPPP PRPREEPEAE PLPPPVQLGE VSEEELRQYD GSDTKKPLLM AIMGQIYDVT
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE PQDLTGDISG LGPFELDALQ DWEYKFMSKY VKVGTVKKTV PVEDGSTAST APEASEATTE AEKAQTTEEK
201: PREVSAEAVK EKEAPSDEGA QEN

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.