Factsheet for TraesCS1A01G173400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G191000.1	Wheat	golgi	90.91	75.56
TraesCS1D01G165400.1	Wheat	plastid	90.37	75.11
HORVU1Hr1G045630.3	Barley	plasma membrane	90.37	73.16
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	84.49	70.85
Os10t0502600-01	Rice	plasma membrane, plastid	82.89	66.81
Zm00001d013914_P001	Maize	extracellular, plasma membrane, plastid	81.28	65.52
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	65.24	55.96
AT5G52240.1	Thale cress	endoplasmic reticulum	65.78	55.91
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	64.71	55.5
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	64.71	55.5
KRH09074	Soybean	endoplasmic reticulum	65.78	55.41
KRH38500	Soybean	endoplasmic reticulum	64.17	54.55
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	74.33	53.88
TraesCS6A01G354500.1	Wheat	cytosol, nucleus, plastid	27.81	50.98
GSMUA_Achr11P...	Banana	plasma membrane	72.19	50.75
TraesCS1A01G173200.3	Wheat	golgi, plastid	59.36	45.49
TraesCS4A01G127500.1	Wheat	endoplasmic reticulum	47.59	44.5
TraesCS6A01G235900.1	Wheat	cytosol	62.57	36.0
TraesCS4A01G048100.1	Wheat	endoplasmic reticulum, golgi, vacuole	25.13	19.83

Protein Annotations

EnsemblPlants:TraesCS1A01G173400.1	EnsemblPlantsGene:TraesCS1A01G173400	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF64	PFAM:PF00173	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	MapMan:11.3.2.1.4	:	:	:

Description

No Description!

Coordinates

chr1A:-:309401615..309403447

Molecular Weight (calculated)

20531.4 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.347

Length

187 amino acids

Sequence
(BLAST)

001: MAVAELWETL NQAILAYTGL SPTAFFTAVA VAAALYHVVS GIFAPPPPPR QRPREEPEAE PLPPPVQLGE VDEEELRQYD GSDPKKPLLM AIKGQIYDVT
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE PQDLNGDTSG LGPFELDALQ DWEYKFMSKY VKVGTIKKAA PAEDGTTSKS HTPLWWQ

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.