Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G256800.1 | Wheat | endoplasmic reticulum | 97.05 | 97.05 |
| TraesCS4B01G256900.1 | Wheat | endoplasmic reticulum | 89.03 | 89.03 |
| Os03t0205500-01 | Rice | endoplasmic reticulum | 86.5 | 86.5 |
| EER95310 | Sorghum | endoplasmic reticulum, golgi | 85.65 | 85.65 |
| GSMUA_Achr6P14400_001 | Banana | endoplasmic reticulum, golgi | 72.15 | 69.8 |
| Zm00001d048139_P001 | Maize | cytosol | 49.37 | 69.23 |
| Zm00001d048140_P001 | Maize | extracellular, plasma membrane | 24.05 | 68.67 |
| KRG90070 | Soybean | endoplasmic reticulum | 65.82 | 64.73 |
| KRH17625 | Soybean | endoplasmic reticulum, golgi, vacuole | 63.71 | 62.66 |
| Bra037079.1-P | Field mustard | golgi | 63.29 | 61.73 |
| CDY08286 | Canola | golgi | 63.29 | 61.73 |
| PGSC0003DMT400002456 | Potato | endoplasmic reticulum | 61.6 | 60.83 |
| Solyc07g044830.2.1 | Tomato | endoplasmic reticulum | 59.92 | 58.44 |
| CDY06492 | Canola | golgi | 59.92 | 58.2 |
| AT4G14965.1 | Thale cress | golgi | 59.07 | 57.14 |
| HORVU4Hr1G069740.2 | Barley | golgi, mitochondrion, peroxisome, plastid | 79.75 | 56.42 |
| VIT_02s0012g02780.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, vacuole | 59.49 | 56.18 |
| TraesCS6A01G354500.1 | Wheat | cytosol, nucleus, plastid | 15.19 | 35.29 |
| TraesCS4A01G127500.1 | Wheat | endoplasmic reticulum | 21.52 | 25.5 |
| TraesCS1A01G173400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.83 | 25.13 |
| TraesCS1A01G173200.3 | Wheat | golgi, plastid | 19.83 | 19.26 |
| TraesCS6A01G235900.1 | Wheat | cytosol | 21.52 | 15.69 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G048100.1 | EnsemblPlantsGene:TraesCS4A01G048100 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:IPR001199 |
| InterPro:IPR036400 | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF4 | PFAM:PF00173 | SEG:seg | SMART:SM01117 |
| SUPFAM:SSF55856 | TMHMM:TMhelix | MapMan:11.3.2.1.4 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:38818971..38823754
Molecular Weight (calculated)
26304.6 Da
IEP (calculated)
8.743
GRAVY (calculated)
-0.279
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGARLPLG LALLAALIAV LLQLYRLRKP RLWTLEELSI YNGTDEGLPI LLGILGSVFD VTKGRSHYGP GGGYHHFSGR DASRAFVSGN FTGDGLTDSL
101: QGLSSMEVNS IVDWRKFYVE RYIFAGKIVG RYYDSEGNPT KYLKGVEMKA KRGAQLLEKQ KREEDKIPSC NSKWSEAEGG EVWCETGYPR LVRRPGDIAL
201: TGQVSQRCAC FQERELGRPG LVVYQGCDYH STSCIVK
101: QGLSSMEVNS IVDWRKFYVE RYIFAGKIVG RYYDSEGNPT KYLKGVEMKA KRGAQLLEKQ KREEDKIPSC NSKWSEAEGG EVWCETGYPR LVRRPGDIAL
201: TGQVSQRCAC FQERELGRPG LVVYQGCDYH STSCIVK
001: MIPARRFLLS PFVGVTFIVV LVSLYFRSSF KSPQHQYQKR LFSAEELALY NGTDETLPIL LGILGSVFDV TKGKFHYGSG GGYNHFAGRD ASRAFVSGNF
101: TGDGLTDSLQ GLSSSEVKSI VDWRGFYSRT YTPVGKLVGR YYDSQGNPTK HLKGAEAKAS RGAQLMEKQK TEEAKQSNCN SRWSQDEGGE VWCDVGVPRL
201: VQRPLEIAIT GSMSKRCACF EEDQLDQSGL EIYKDCEPLA KTCRV
101: TGDGLTDSLQ GLSSSEVKSI VDWRGFYSRT YTPVGKLVGR YYDSQGNPTK HLKGAEAKAS RGAQLMEKQK TEEAKQSNCN SRWSQDEGGE VWCDVGVPRL
201: VQRPLEIAIT GSMSKRCACF EEDQLDQSGL EIYKDCEPLA KTCRV
Arabidopsis Description
MAPR4MAPR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UY73]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.