Factsheet for VIT_02s0012g02780.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
plasma membrane 1
mitochondrion 2
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17625	Soybean	endoplasmic reticulum, golgi, vacuole	68.13	70.95
PGSC0003DMT400002456	Potato	endoplasmic reticulum	64.94	67.92
Solyc07g044830.2.1	Tomato	endoplasmic reticulum	65.34	67.49
KRG90070	Soybean	endoplasmic reticulum	64.14	66.81
AT4G14965.1	Thale cress	golgi	62.95	64.49
CDY06492	Canola	golgi	62.15	63.93
TraesCS4B01G256900.1	Wheat	endoplasmic reticulum	60.16	63.71
GSMUA_Achr6P14400_001	Banana	endoplasmic reticulum, golgi	61.75	63.27
Zm00001d048139_P001	Maize	cytosol	42.23	62.72
Bra037079.1-P	Field mustard	golgi	58.96	60.91
CDY08286	Canola	golgi	58.96	60.91
EER95310	Sorghum	endoplasmic reticulum, golgi	56.57	59.92
TraesCS4A01G048100.1	Wheat	endoplasmic reticulum, golgi, vacuole	56.18	59.49
TraesCS4D01G256800.1	Wheat	endoplasmic reticulum	55.78	59.07
Os03t0205500-01	Rice	endoplasmic reticulum	55.38	58.65
Zm00001d048140_P001	Maize	extracellular, plasma membrane	16.73	50.6
HORVU4Hr1G069740.2	Barley	golgi, mitochondrion, peroxisome, plastid	59.76	44.78
VIT_04s0008g06870.t01	Wine grape	cytosol, nucleus, plastid	14.74	37.37
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	18.73	21.86

Protein Annotations

EntrezGene:100267661	wikigene:100267661	MapMan:11.3.2.1.4	Gene3D:3.10.120.10	ProteinID:CBI33789	ProteinID:CBI33789.3
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	UniProt:D7TTM4	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
InterPro:IPR001199	InterPro:IPR036400	EntrezGene:LOC100267661	wikigene:LOC100267661	PFAM:PF00173	PANTHER:PTHR10281
PANTHER:PTHR10281:SF4	SMART:SM01117	SUPFAM:SSF55856	TIGR:TC58362	TMHMM:TMhelix	UniParc:UPI0001982D57
ArrayExpress:VIT_02s0012g02780	EnsemblPlantsGene:VIT_02s0012g02780	EnsemblPlants:VIT_02s0012g02780.t01	unigene:Vvi.7218	RefSeq:XP_002274563	RefSeq:XP_002274563.1
RefSeq:XP_010662843.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:10594921..10608570

Molecular Weight (calculated)

27627.9 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.303

Length

251 amino acids

Sequence
(BLAST)

001: MVETEREREK VRSQTNFAGI AVSISLLVLL LGLSFSSKPF PSSPLRLFTA QELALHNGAN DSLPILLAIL GSVFDVTKGK SHYGLGGGYN HFSGRDASRA
101: FVSGNFSGDG LTDSLRGLSS TEVKSVVEWR DFYFRSYIFV GKLVGLYYDS HGNPTKQLKG VEAKAARGAQ LLEKQKSEEA KLPSCNSRWS QDEGGKVWCD
201: NGYPRLIQRP LEIALTGKMS KRCACFKEDQ LGQQGLEVYQ GCDYHAKVCQ V

Best Arabidopsis Sequence Match ( AT4G14965.1 )
(BLAST)

001: MIPARRFLLS PFVGVTFIVV LVSLYFRSSF KSPQHQYQKR LFSAEELALY NGTDETLPIL LGILGSVFDV TKGKFHYGSG GGYNHFAGRD ASRAFVSGNF
101: TGDGLTDSLQ GLSSSEVKSI VDWRGFYSRT YTPVGKLVGR YYDSQGNPTK HLKGAEAKAS RGAQLMEKQK TEEAKQSNCN SRWSQDEGGE VWCDVGVPRL
201: VQRPLEIAIT GSMSKRCACF EEDQLDQSGL EIYKDCEPLA KTCRV

Arabidopsis Description

MAPR4MAPR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UY73]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.