Factsheet for VIT_16s0100g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 3
mitochondrion 1
endoplasmic reticulum 4
plasma membrane 3
vacuole 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48890.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018028.1-P	Field mustard	endoplasmic reticulum	68.37	66.22
CDY71101	Canola	endoplasmic reticulum	67.91	65.77
PGSC0003DMT400037158	Potato	mitochondrion	69.3	65.64
CDY05880	Canola	endoplasmic reticulum	67.44	65.32
Solyc03g025950.2.1	Tomato	plastid	67.91	64.32
AT3G48890.1	Thale cress	endoplasmic reticulum	67.91	62.66
KRG91473	Soybean	endoplasmic reticulum	62.79	60.0
KRH35342	Soybean	endoplasmic reticulum	63.26	57.87
VIT_04s0008g06870.t01	Wine grape	cytosol, nucleus, plastid	24.65	53.54
TraesCS1B01G191100.2	Wheat	plastid	50.23	44.26
TraesCS1D01G165500.1	Wheat	golgi, plastid	50.23	44.26
TraesCS1A01G173200.3	Wheat	golgi, plastid	49.3	43.44
EER93976	Sorghum	plastid	47.44	39.38
Os10t0502500-04	Rice	plastid	47.91	38.87
HORVU1Hr1G045610.5	Barley	plastid	49.3	37.06
VIT_02s0012g02780.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, vacuole	21.86	18.73

Protein Annotations

EntrezGene:100253241	wikigene:100253241	MapMan:11.3.2.1.4	Gene3D:3.10.120.10	UniProt:A5C997	EMBL:AM486747
ProteinID:CAN62209	ProteinID:CAN62209.1	ProteinID:CCB56416	ProteinID:CCB56416.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
EMBL:FN596000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904	GO:GO:0020037
InterPro:IPR001199	InterPro:IPR036400	EntrezGene:LOC100253241	wikigene:LOC100253241	PFAM:PF00173	PANTHER:PTHR10281
PANTHER:PTHR10281:SF45	SMART:SM01117	SUPFAM:SSF55856	TIGR:TC51733	TMHMM:TMhelix	UniParc:UPI0001522C07
ArrayExpress:VIT_16s0100g01280	EnsemblPlantsGene:VIT_16s0100g01280	EnsemblPlants:VIT_16s0100g01280.t01	RefSeq:XP_002262780	RefSeq:XP_002262780.1	SEG:seg

Description

No Description!

Coordinates

chr16:+:16790774..16793578

Molecular Weight (calculated)

23521.8 Da

IEP (calculated)

4.299

GRAVY (calculated)

-0.280

Length

215 amino acids

Sequence
(BLAST)

001: MALQLWETLK EAITAYTGLS PTAFFTILAL ALAVYHVVSG FFVSPVHPVR ERELFKEMEP LPPPVQLGEI TEEELKTYDG SDSKKPLLMA IKGQIYDVSQ
101: GRIFYGPGGP YALFAGKDAS RALAKMSFEE QDLTGDLSDL GPFELEALQD WEYKFMSKYT KVGTIKKTFP VTDGSSTVEP SETTDRDIAK PAEDGPSESL
201: PAKPVEATTG GDAQE

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.