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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • extracellular 3
  • mitochondrion 1
  • endoplasmic reticulum 4
  • plasma membrane 3
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:extracellular
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48890.1 KRH22653 AT5G22290.1 21798944
AT3G48890.1 KRH26664 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG91473 Soybean endoplasmic reticulum 80.43 84.0
KRH38500 Soybean endoplasmic reticulum 66.38 70.91
KRH09074 Soybean endoplasmic reticulum 65.53 69.37
VIT_16s0100g01280.t01 Wine grape endoplasmic reticulum 57.87 63.26
PGSC0003DMT400037158 Potato mitochondrion 60.0 62.11
KRH62716 Soybean mitochondrion 20.85 62.03
Solyc03g025950.2.1 Tomato plastid 59.57 61.67
Bra018028.1-P Field mustard endoplasmic reticulum 57.45 60.81
Bra019571.1-P Field mustard cytosol 32.34 57.58
CDY37905 Canola cytosol 32.34 57.58
AT3G48890.1 Thale cress endoplasmic reticulum 56.17 56.65
KRH61642 Soybean cytosol 21.7 51.0
KRH31695 Soybean cytosol 16.6 49.37
KRH52307 Soybean nucleus 22.13 46.85
KRH75821 Soybean cytosol, nucleus, plastid 16.6 46.43
KRG94134 Soybean endoplasmic reticulum 39.15 46.0
TraesCS1D01G165500.1 Wheat golgi, plastid 45.53 43.85
TraesCS1B01G191100.2 Wheat plastid 43.83 42.21
TraesCS1A01G173200.3 Wheat golgi, plastid 43.83 42.21
EER93976 Sorghum plastid 42.98 39.0
Os10t0502500-04 Rice plastid 43.83 38.87
KRH25811 Soybean mitochondrion 15.74 37.76
HORVU1Hr1G045610.5 Barley plastid 42.98 35.31
KRH17625 Soybean endoplasmic reticulum, golgi, vacuole 19.57 19.09
KRG90070 Soybean endoplasmic reticulum 19.15 18.67
Protein Annotations
EntrezGene:100791779MapMan:11.3.2.1.4Gene3D:3.10.120.10EMBL:ACUP02006664InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sf
EnsemblPlantsGene:GLYMA_10G237000GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005623GO:GO:0012505
GO:GO:0016020GO:GO:0016021GO:GO:0020037UniProt:I1LDS8InterPro:IPR001199InterPro:IPR036400
EnsemblPlants:KRH35342ProteinID:KRH35342ProteinID:KRH35342.1PFAM:PF00173PANTHER:PTHR10281PANTHER:PTHR10281:SF62
SMART:SM01117SUPFAM:SSF55856TMHMM:TMhelixUniParc:UPI000233C662SEG:seg:
Description
hypothetical protein
Coordinates
chr10:+:46580785..46583922
Molecular Weight (calculated)
25870.4 Da
IEP (calculated)
4.747
GRAVY (calculated)
-0.463
Length
235 amino acids
Sequence
(BLAST)
001: MAVQLWETLK EAIVAYTGFS PSTFFTVLAL LFAAYYVVTG LFGSSDDHHH RHRHAQEEEM PPLRPPVQLG EITAEELKAY DGTDPEKPLL MAIKAQIYDV
101: SQSRMFYGPG GPYALFAGKD ASRALAKMSF EEKDLTGDIS GLGPFEIDAL QDWEYKFMSK YVKVGTVKSE EVPVTEPEST GEPSESTSRD IDAAAAAAKH
201: TEDGKSETPA VKSDETPSNV DADIPLRKMK KKRTS
Best Arabidopsis Sequence Match ( AT5G52240.1 )
(BLAST)
001: MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ EEEPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DVSGLGPFEL DALQDWEYKF MSKYAKVGTV KVAGSEPETA SVSEPTENVE QDAHVTTTPG
201: KTVVDKSDDA PAETVLKKEE
Arabidopsis Description
MSBP1Membrane steroid-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFM6]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.