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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87002 Canola endoplasmic reticulum 89.39 53.88
Bra032055.1-P Field mustard cytosol 30.3 40.0
Bra018028.1-P Field mustard endoplasmic reticulum 63.64 37.84
KRG91473 Soybean endoplasmic reticulum 59.09 34.67
KRH35342 Soybean endoplasmic reticulum 57.58 32.34
Bra028301.1-P Field mustard endoplasmic reticulum, extracellular, golgi 53.03 32.11
TraesCS1A01G173200.3 Wheat golgi, plastid 56.06 30.33
TraesCS1B01G191100.2 Wheat plastid 56.06 30.33
TraesCS1D01G165500.1 Wheat golgi, plastid 56.06 30.33
Os10t0502500-04 Rice plastid 55.3 27.55
EER93976 Sorghum plastid 51.52 26.25
HORVU1Hr1G045610.5 Barley plastid 54.55 25.17
Bra037079.1-P Field mustard golgi 25.76 13.99
Protein Annotations
EnsemblPlants:Bra019571.1EnsemblPlants:Bra019571.1-PEnsemblPlantsGene:Bra019571Gene3D:3.10.120.10InterPro:Cyt_B5-like_heme/steroid-bdInterPro:Cyt_B5-like_heme/steroid_sf
InterPro:IPR001199InterPro:IPR036400PANTHER:PTHR10281PANTHER:PTHR10281:SF45PFAM:PF00173SEG:seg
SMART:SM01117SUPFAM:SSF55856UniParc:UPI000253EFE8UniProt:M4DSS8MapMan:11.3.2.1.4:
Description
AT3G48890 (E=4e-039) ATMP2, ATMAPR3, MSBP2, MAPR3 | ATMP2; heme binding
Coordinates
chrA06:-:12100175..12101009
Molecular Weight (calculated)
14465.7 Da
IEP (calculated)
4.264
GRAVY (calculated)
-0.767
Length
132 amino acids
Sequence
(BLAST)
001: MAIKGQIYDV SQSRMFYGPG GPYALFAGKD ASRALAKMSF EENDLTGDIS GLGPFELDAL QDWEYKFMSK YVKVGTIQKK DEEGKEKTED STNTGEEASA
101: TTVGETSRSV EEKTIQTIEK KDVADGDAAK EE
Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.