Factsheet for Os10t0502500-04

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019571.1-P	Field mustard	cytosol	27.55	55.3
CDY37905	Canola	cytosol	27.17	54.55
TraesCS1D01G165500.1	Wheat	golgi, plastid	47.92	52.05
TraesCS1A01G173200.3	Wheat	golgi, plastid	47.92	52.05
Os02t0793700-02	Rice	extracellular	20.0	51.96
TraesCS1B01G191100.2	Wheat	plastid	47.55	51.64
CDY71101	Canola	endoplasmic reticulum	42.26	50.45
Bra018028.1-P	Field mustard	endoplasmic reticulum	41.51	49.55
CDY05880	Canola	endoplasmic reticulum	41.13	49.1
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	38.87	47.91
Os10t0502600-01	Rice	plasma membrane, plastid	41.89	47.84
PGSC0003DMT400037158	Potato	mitochondrion	40.0	46.7
Solyc03g025950.2.1	Tomato	plastid	40.0	46.7
KRG91473	Soybean	endoplasmic reticulum	39.62	46.67
EER93976	Sorghum	plastid	44.91	45.95
HORVU1Hr1G045610.5	Barley	plastid	48.68	45.1
AT3G48890.1	Thale cress	endoplasmic reticulum	38.87	44.21
CDX87002	Canola	endoplasmic reticulum	36.23	43.84
KRH35342	Soybean	endoplasmic reticulum	38.87	43.83
Os03t0321000-01	Rice	endoplasmic reticulum	30.19	41.88
Os02t0640300-01	Rice	plasma membrane	38.87	30.93
Os03t0205500-01	Rice	endoplasmic reticulum	17.36	19.41

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	EntrezGene:4349045	ProteinID:AAG13623.1	ProteinID:AAP54486.1	EMBL:AK060167
EMBL:AK061824	EMBL:AK098881	ProteinID:BAF26906.1	ProteinID:BAT11540.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
ProteinID:EEE51227.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005496	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0008289	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0019904	GO:GO:0020037	InterPro:IPR001199	InterPro:IPR036400	EnsemblPlantsGene:Os10g0502500
EnsemblPlants:Os10t0502500-04	PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF41	UniProt:Q9FVZ9	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00000A639C	RefSeq:XP_015614353.1	SEG:seg	:

Description

MEMBRANE STEROID BINDING PROTEIN 1Cytochrome b5 domain containing protein. (Os10t0502500-04)

Coordinates

chr10:-:19166324..19168787

Molecular Weight (calculated)

27711.9 Da

IEP (calculated)

4.431

GRAVY (calculated)

-0.078

Length

265 amino acids

Sequence
(BLAST)

001: MATCSAACAR PAVVVFASPA AARRRAASSV YLPGRPLRGG GVVRCSAGPV SGGMISKKVA ELWAAARSAS PVAVIAAVAG AAVVYKVGSS LLAPPPPPAR
101: PREEPSEEAP PPPEPVQVGE ITAEELLQYD GSDPEKPLLM AIKGQIYDVS QSRLFYGPGG PYALFAGKDA SRALAKMSFE PQDLTDDISG LSLLELSALQ
201: DWEYKFSSKY VKVGTIKKVL VEQGGDSTAD AIEEAAVDGE DSILTAKMSN QLLYEEEMEV GSDDP

Best Arabidopsis Sequence Match ( AT5G52240.1 )
(BLAST)

001: MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ EEEPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DVSGLGPFEL DALQDWEYKF MSKYAKVGTV KVAGSEPETA SVSEPTENVE QDAHVTTTPG
201: KTVVDKSDDA PAETVLKKEE

Arabidopsis Description

MSBP1Membrane steroid-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFM6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.