Factsheet for TraesCS1D01G165500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G173200.3	Wheat	golgi, plastid	95.08	95.08
TraesCS1B01G191100.2	Wheat	plastid	94.26	94.26
HORVU1Hr1G045610.5	Barley	plastid	93.85	80.07
Bra019571.1-P	Field mustard	cytosol	30.33	56.06
CDY37905	Canola	cytosol	29.92	55.3
TraesCS6D01G336900.1	Wheat	cytosol, nucleus, plastid	22.54	53.92
TraesCS1D01G165400.1	Wheat	plastid	48.36	52.44
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	44.26	50.23
CDY71101	Canola	endoplasmic reticulum	44.67	49.1
Solyc03g025950.2.1	Tomato	plastid	45.49	48.9
KRG91473	Soybean	endoplasmic reticulum	45.08	48.89
Bra018028.1-P	Field mustard	endoplasmic reticulum	44.26	48.65
PGSC0003DMT400037158	Potato	mitochondrion	45.08	48.46
CDY05880	Canola	endoplasmic reticulum	43.85	48.2
Os10t0502500-04	Rice	plastid	52.05	47.92
EER93976	Sorghum	plastid	49.18	46.33
KRH35342	Soybean	endoplasmic reticulum	43.85	45.53
AT3G48890.1	Thale cress	endoplasmic reticulum	43.44	45.49
CDX87002	Canola	endoplasmic reticulum	39.75	44.29
TraesCS4D01G178900.2	Wheat	endoplasmic reticulum	32.79	40.82
TraesCS6D01G218900.1	Wheat	cytosol, endoplasmic reticulum, plastid	42.21	35.89
TraesCS4D01G256800.1	Wheat	endoplasmic reticulum	19.26	19.83

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005783	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0019904
InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF41	SMART:SM01117
SUPFAM:SSF55856	EnsemblPlantsGene:TraesCS1D01G165500	EnsemblPlants:TraesCS1D01G165500.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:236500926..236502917

Molecular Weight (calculated)

25357.2 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.190

Length

244 amino acids

Sequence
(BLAST)

001: MAACSALSAA TLPSAAAPVS RRRATASPRL PDKRVSGAVR CRAAPGGLGI SGKVAELWQA ARSAPPGTVL AAVAAAAAVY KVASGLLAPP PPPPRRWQEV
101: ADEALPPAPE PVQVGEITAD ELRQYDGSDP EKPLLMAIKG QIYDVSQSRM FYGPGGPYAL FAGKDASRAL AKMSFEPQDL TGDVSGLGPF ELSALQDWEY
201: KFTSKYVKVG TVKGTGPIEQ GNVSTTSEIQ EEAAAVKLNG EKAP

Best Arabidopsis Sequence Match ( AT5G52240.1 )
(BLAST)

001: MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ EEEPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DVSGLGPFEL DALQDWEYKF MSKYAKVGTV KVAGSEPETA SVSEPTENVE QDAHVTTTPG
201: KTVVDKSDDA PAETVLKKEE

Arabidopsis Description

MSBP1Membrane steroid-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFM6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.