CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05944	Sorghum	cytosol, nucleus, plastid	20.85	52.43
Bra019571.1-P	Field mustard	cytosol	26.25	51.52
CDY37905	Canola	cytosol	25.48	50.0
TraesCS1D01G165500.1	Wheat	golgi, plastid	46.33	49.18
TraesCS1B01G191100.2	Wheat	plastid	46.33	49.18
TraesCS1A01G173200.3	Wheat	golgi, plastid	46.33	49.18
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	42.08	48.88
CDY71101	Canola	endoplasmic reticulum	41.7	48.65
Bra018028.1-P	Field mustard	endoplasmic reticulum	41.31	48.2
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	39.38	47.44
CDY05880	Canola	endoplasmic reticulum	40.54	47.3
AT3G48890.1	Thale cress	endoplasmic reticulum	40.93	45.49
KRG91473	Soybean	endoplasmic reticulum	39.38	45.33
Os10t0502500-04	Rice	plastid	45.95	44.91
PGSC0003DMT400037158	Potato	mitochondrion	38.61	44.05
Solyc03g025950.2.1	Tomato	plastid	38.61	44.05
CDX87002	Canola	endoplasmic reticulum	36.68	43.38
KRH35342	Soybean	endoplasmic reticulum	39.0	42.98
HORVU1Hr1G045610.5	Barley	plastid	45.56	41.26
EER94942	Sorghum	endoplasmic reticulum	29.34	37.07
EES05839	Sorghum	plastid	36.29	26.04
EER95310	Sorghum	endoplasmic reticulum, golgi	17.37	18.99

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	UniProt:C5WWE2	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	EnsemblPlants:EER93976
ProteinID:EER93976	ProteinID:EER93976.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004471	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0005783	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020
GO:GO:0019904	GO:GO:0055114	InterPro:IPR001199	InterPro:IPR036400	PFAM:PF00173	PANTHER:PTHR10281
PANTHER:PTHR10281:SF41	SMART:SM01117	EnsemblPlantsGene:SORBI_3001G202500	SUPFAM:SSF55856	unigene:Sbi.21093	UniParc:UPI0003C6E7CB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:18417692..18420414

Molecular Weight (calculated)

27389.6 Da

IEP (calculated)

6.067

GRAVY (calculated)

-0.222

Length

259 amino acids

Sequence
(BLAST)

001: MAPCSSVVAA PSLSASAPSS RRRASTVVCL QGVRRSRVAS CRVRCSAAGG QGGVKVPAKL SELWAAAKGA PPLAVLAGVA AAVAVYKVGS SLFAPRRPAP
101: RRLETQTAPP PPAPEPVQVG EITEEELRQY DGSDPEKPLL MAIKGQIYDV SQSRMFYGPG GAYSLFAGKD ASRALAKMSF EPPDLNGDIS GLTPMELGSL
201: NDWEYKFTSK YVKVGTIRRT VPAEEVYGSI SPEIREEVTV PVVEAELEPE PEPHDGDAP

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.