Factsheet for Solyc03g025950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plastid: 20363867
plastid: 26371478

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48890.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G48890.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037158	Potato	mitochondrion	92.95	92.95
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	64.32	67.91
CDY71101	Canola	endoplasmic reticulum	60.79	62.16
Bra018028.1-P	Field mustard	endoplasmic reticulum	60.35	61.71
KRG91473	Soybean	endoplasmic reticulum	60.79	61.33
CDY05880	Canola	endoplasmic reticulum	59.47	60.81
Solyc06g035870.2.1	Tomato	plastid	63.88	60.42
KRH35342	Soybean	endoplasmic reticulum	61.67	59.57
AT3G48890.1	Thale cress	endoplasmic reticulum	58.59	57.08
Solyc08g029160.1.1	Tomato	extracellular	24.23	55.0
Solyc04g049790.2.1	Tomato	endoplasmic reticulum	36.56	51.23
TraesCS1D01G165500.1	Wheat	golgi, plastid	48.9	45.49
TraesCS1B01G191100.2	Wheat	plastid	47.58	44.26
TraesCS1A01G173200.3	Wheat	golgi, plastid	46.7	43.44
Os10t0502500-04	Rice	plastid	46.7	40.0
EER93976	Sorghum	plastid	44.05	38.61
HORVU1Hr1G045610.5	Barley	plastid	46.26	36.71
Solyc07g044830.2.1	Tomato	endoplasmic reticulum	18.5	17.28

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005783	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0019904	GO:GO:0020037	InterPro:IPR001199	InterPro:IPR036400	UniProt:K4BF68
PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF45	SMART:SM01117	SUPFAM:SSF55856	EnsemblPlantsGene:Solyc03g025950.2
EnsemblPlants:Solyc03g025950.2.1	TMHMM:TMhelix	UniParc:UPI0002768EA1	SEG:seg	:	:

Description

Membrane steroid-binding protein 2 [Source:Projected from Arabidopsis thaliana (AT3G48890) UniProtKB/Swiss-Prot;Acc:Q9M2Z4]

Coordinates

chr3:+:3384122..3387029

Molecular Weight (calculated)

24695.8 Da

IEP (calculated)

4.218

GRAVY (calculated)

-0.469

Length

227 amino acids

Sequence
(BLAST)

001: MAVELWETLK DSITAYTGLA PTTFFTLVAL ALAFYYVVSE LFGSPDNRHQ QRPRDFEEQK PLPPPVQLGE ISGEELKQYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE EKDLTGDISG LGPFELEALQ DWEYKFMSKY VKVGTVKQTV PVSDGAANDE SVESTDPETK PAEAVASESA
201: KPSEDGPSGS SVAEIVDKSD GDVDKKD

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.