Factsheet for Solyc06g035870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076936	Potato	endoplasmic reticulum, plasma membrane, vacuole	53.33	88.28
Solyc03g025950.2.1	Tomato	plastid	60.42	63.88
KRH62716	Soybean	mitochondrion	19.17	58.23
Solyc08g029160.1.1	Tomato	extracellular	23.75	57.0
PGSC0003DMT400011501	Potato	cytosol	30.0	52.94
Solyc04g049790.2.1	Tomato	endoplasmic reticulum	32.92	48.77
Solyc07g044830.2.1	Tomato	endoplasmic reticulum	21.25	20.99

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005783	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0019904	GO:GO:0020037	InterPro:IPR001199	InterPro:IPR036400	UniProt:K4C4V7
PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF45	SMART:SM01117	SUPFAM:SSF55856	EnsemblPlantsGene:Solyc06g035870.2
EnsemblPlants:Solyc06g035870.2.1	TMHMM:TMhelix	UniParc:UPI0002765D64	:	:	:

Description

No Description!

Coordinates

chr6:-:25115574..25117598

Molecular Weight (calculated)

25831.7 Da

IEP (calculated)

4.151

GRAVY (calculated)

-0.497

Length

240 amino acids

Sequence
(BLAST)

001: MALQQWDAWK ESIIESTGLS PATIFTIVAL AVAFYYAISG FSPSSDHAHH QRSRDFEEQT QVLPPVQLGE VTEDELKEYD GSDPKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKLSFE EKDLTGDISG LGAFELDALQ DWEYKFMSKY VKVGTVKQAV PVNDGQANDE TIEATTDGEA KPGEDDASGS
201: AKPSEYDGPS KGSEAGADAP SETAAVESVV KSEADVDKKD

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.