Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- plasma membrane 3
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g035870.2.1 | Tomato | plastid | 88.28 | 53.33 |
| KRH62716 | Soybean | mitochondrion | 26.21 | 48.1 |
| PGSC0003DMT400037158 | Potato | mitochondrion | 71.72 | 45.81 |
| PGSC0003DMT400029206 | Potato | cytosol | 31.03 | 45.0 |
| PGSC0003DMT400038438 | Potato | cytosol | 31.03 | 45.0 |
| PGSC0003DMT400011501 | Potato | cytosol | 26.21 | 27.94 |
| PGSC0003DMT400002456 | Potato | endoplasmic reticulum | 23.45 | 14.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076936 | EnsemblPlantsGene:PGSC0003DMG400029924 | Gene3D:3.10.120.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:IPR001199 | InterPro:IPR036400 | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF45 |
| PFAM:PF00173 | PGSC:PGSC0003DMG400029924 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI000296F71C |
| UniProt:M1CXM2 | MapMan:11.3.2.1.4 | : | : | : | : |
Description
Steroid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029924]
Coordinates
chr6:-:37258801..37260875
Molecular Weight (calculated)
16020.9 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.262
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQQWDAWK ESIIESTGLS PATIFTIVAL AVAFYYAISG FFPSSDHGHH QRSRDFEEQT QALPPPVQLG EVTEEELKEY DGSDPKKPLL MAIKGQIYDV
101: SQSRMFYGPG GPYALFAGKD ASRALAKLSF EEKDLTGDIS GLRCI
101: SQSRMFYGPG GPYALFAGKD ASRALAKLSF EEKDLTGDIS GLRCI
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.