Factsheet for PGSC0003DMT400002456

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 7
golgi 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g044830.2.1	Tomato	endoplasmic reticulum	86.67	85.6
KRH17625	Soybean	endoplasmic reticulum, golgi, vacuole	72.5	72.2
AT4G14965.1	Thale cress	golgi	71.25	69.8
CDY06492	Canola	golgi	70.42	69.26
KRG90070	Soybean	endoplasmic reticulum	68.75	68.46
Bra037079.1-P	Field mustard	golgi	67.5	66.67
CDY08286	Canola	golgi	67.5	66.67
VIT_02s0012g02780.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, vacuole	67.92	64.94
GSMUA_Achr6P14400_001	Banana	endoplasmic reticulum, golgi	65.42	64.08
TraesCS4B01G256900.1	Wheat	endoplasmic reticulum	62.92	63.71
Zm00001d048139_P001	Maize	cytosol	44.17	62.72
Os03t0205500-01	Rice	endoplasmic reticulum	60.83	61.6
TraesCS4D01G256800.1	Wheat	endoplasmic reticulum	60.83	61.6
TraesCS4A01G048100.1	Wheat	endoplasmic reticulum, golgi, vacuole	60.83	61.6
EER95310	Sorghum	endoplasmic reticulum, golgi	60.42	61.18
Zm00001d048140_P001	Maize	extracellular, plasma membrane	17.08	49.4
HORVU4Hr1G069740.2	Barley	golgi, mitochondrion, peroxisome, plastid	62.92	45.07
PGSC0003DMT400029206	Potato	cytosol	17.08	41.0
PGSC0003DMT400038438	Potato	cytosol	16.67	40.0
PGSC0003DMT400076936	Potato	endoplasmic reticulum, plasma membrane, vacuole	14.17	23.45
PGSC0003DMT400011501	Potato	cytosol	12.5	22.06
PGSC0003DMT400037158	Potato	mitochondrion	18.33	19.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400002456	EnsemblPlantsGene:PGSC0003DMG400000936	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF4	PFAM:PF00173	PGSC:PGSC0003DMG400000936	SMART:SM01117
SUPFAM:SSF55856	UniParc:UPI0002969EED	UniProt:M0ZK53	MapMan:11.3.2.1.4	:	:

Description

Fiber protein Fb38 [Source:PGSC_GENE;Acc:PGSC0003DMG400000936]

Coordinates

chr7:+:42594317..42602321

Molecular Weight (calculated)

26848.7 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.385

Length

240 amino acids

Sequence
(BLAST)

001: MGWSPFLGIP LIVALLSFLF YKNFPLNSAP QNFPRLFTVE ELALYNGSDP RLPIFLGIIG SVFDVSKGKS HYGVGGGYNH FAGRDASRAF VSGNFTGDGL
101: TDSLRDLSSA EVKSIVDWRD FYFRTYTYVG KLVGRYYDSE GNPTKYLKGV EAKAARGAQL MEKQKNEEAK LPSCNSRWSQ QEGSEVWCDD GYPRLVQRPT
201: EIALTGKMSK RCACFKEEDL DQPGLEVYEG CDYSAKTCRL

Best Arabidopsis Sequence Match ( AT4G14965.1 )
(BLAST)

001: MIPARRFLLS PFVGVTFIVV LVSLYFRSSF KSPQHQYQKR LFSAEELALY NGTDETLPIL LGILGSVFDV TKGKFHYGSG GGYNHFAGRD ASRAFVSGNF
101: TGDGLTDSLQ GLSSSEVKSI VDWRGFYSRT YTPVGKLVGR YYDSQGNPTK HLKGAEAKAS RGAQLMEKQK TEEAKQSNCN SRWSQDEGGE VWCDVGVPRL
201: VQRPLEIAIT GSMSKRCACF EEDQLDQSGL EIYKDCEPLA KTCRV

Arabidopsis Description

MAPR4MAPR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UY73]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.