Factsheet for PGSC0003DMT400037158

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
plasma membrane 3
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48890.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G48890.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025950.2.1	Tomato	plastid	92.95	92.95
PGSC0003DMT400076936	Potato	endoplasmic reticulum, plasma membrane, vacuole	45.81	71.72
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	65.64	69.3
CDY71101	Canola	endoplasmic reticulum	61.23	62.61
Bra018028.1-P	Field mustard	endoplasmic reticulum	60.79	62.16
KRG91473	Soybean	endoplasmic reticulum	60.79	61.33
CDY05880	Canola	endoplasmic reticulum	59.91	61.26
KRH35342	Soybean	endoplasmic reticulum	62.11	60.0
AT3G48890.1	Thale cress	endoplasmic reticulum	59.03	57.51
PGSC0003DMT400029206	Potato	cytosol	24.67	56.0
PGSC0003DMT400038438	Potato	cytosol	24.67	56.0
PGSC0003DMT400011501	Potato	cytosol	31.72	52.94
TraesCS1D01G165500.1	Wheat	golgi, plastid	48.46	45.08
TraesCS1B01G191100.2	Wheat	plastid	47.14	43.85
TraesCS1A01G173200.3	Wheat	golgi, plastid	46.26	43.03
Os10t0502500-04	Rice	plastid	46.7	40.0
EER93976	Sorghum	plastid	44.05	38.61
HORVU1Hr1G045610.5	Barley	plastid	45.81	36.36
PGSC0003DMT400002456	Potato	endoplasmic reticulum	19.38	18.33

Protein Annotations

EntrezGene:102604867	MapMan:11.3.2.1.4	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005783	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	GO:GO:0019904	InterPro:IPR001199	InterPro:IPR036400	UniProt:M1B4X6	PFAM:PF00173
EnsemblPlantsGene:PGSC0003DMG400014328	PGSC:PGSC0003DMG400014328	EnsemblPlants:PGSC0003DMT400037158	PANTHER:PTHR10281	PANTHER:PTHR10281:SF45	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI000294F06F	RefSeq:XP_006353331.1	SEG:seg	:

Description

Steroid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014328]

Coordinates

chr3:-:42580493..42583436

Molecular Weight (calculated)

24725.8 Da

IEP (calculated)

4.172

GRAVY (calculated)

-0.479

Length

227 amino acids

Sequence
(BLAST)

001: MAVELWETLK DSITAYTGLA PTTFFTLVAL ALAFYYVVSE LFGSPDNRHQ QRPRDFEEQQ PLPPPVQLGE ISGEELKQYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE EKDLTGDISG LGPFELEALQ DWEYKFMSKY VKVGTVKQTV PVSDGAANDE SVESTDPETK PAEAVASESA
201: KPSEDGPSGS VVTETVDKSD GDVDKKD

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.