CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 5
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48890.1	CDX70995	AT5G22290.1	21798944
AT3G48890.1	CDX88803	AT5G22290.1	21798944
AT3G48890.1	CDX92368	AT5G22290.1	21798944
AT3G48890.1	CDY09128	AT5G22290.1	21798944
AT3G48890.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018028.1-P	Field mustard	endoplasmic reticulum	97.75	97.75
CDY05880	Canola	endoplasmic reticulum	96.85	96.85
CDX87002	Canola	endoplasmic reticulum	68.47	69.41
AT3G48890.1	Thale cress	endoplasmic reticulum	72.07	68.67
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	65.77	67.91
CDY37905	Canola	cytosol	36.94	62.12
PGSC0003DMT400037158	Potato	mitochondrion	62.61	61.23
Solyc03g025950.2.1	Tomato	plastid	62.16	60.79
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	57.66	58.72
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	57.66	58.72
CDY36148	Canola	nucleus	22.97	51.0
TraesCS1D01G165500.1	Wheat	golgi, plastid	49.1	44.67
TraesCS1B01G191100.2	Wheat	plastid	47.75	43.44
TraesCS1A01G173200.3	Wheat	golgi, plastid	47.3	43.03
Os10t0502500-04	Rice	plastid	50.45	42.26
EER93976	Sorghum	plastid	48.65	41.7
HORVU1Hr1G045610.5	Barley	plastid	46.85	36.36
CDY08286	Canola	golgi	22.07	20.16
CDY06492	Canola	golgi	22.07	20.08

Protein Annotations

EnsemblPlants:CDY71101	EnsemblPlantsGene:GSBRNA2T00011190001	Gene3D:3.10.120.10	GO:A0A078JZU4	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199	InterPro:IPR036400	PANTHER:PTHR10281
PANTHER:PTHR10281:SF45	PFAM:PF00173	ProteinID:CDY71101	ProteinID:CDY71101.1	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0001BA917B	UniProt:A0A078JZU4	MapMan:11.3.2.1.4	:

Description

BnaAnng36100DBnaAnng36100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZU4]

Coordinates

chrLK044452:+:66..1349

Molecular Weight (calculated)

24315.2 Da

IEP (calculated)

4.111

GRAVY (calculated)

-0.515

Length

222 amino acids

Sequence
(BLAST)

001: MVVELWETVK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFASPEEHRP RSTEDYPQPE PLPPPVQLGE ITEEELKQYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE ETDLTGDISG LGPFELDALQ DWEYKFMSKY VKVGTIQKND GEGKESAEPS TNTVEEASAE VAHGETSTSI
201: EEKTEETTEK KDVANGDAAK ED

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.