Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- endoplasmic reticulum 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018028.1-P | Field mustard | endoplasmic reticulum | 69.1 | 72.52 |
| CDY71101 | Canola | endoplasmic reticulum | 68.67 | 72.07 |
| CDY05880 | Canola | endoplasmic reticulum | 68.24 | 71.62 |
| VIT_16s0100g01280.t01 | Wine grape | endoplasmic reticulum | 62.66 | 67.91 |
| AT5G52240.1 | Thale cress | endoplasmic reticulum | 57.51 | 60.91 |
| KRG91473 | Soybean | endoplasmic reticulum | 58.8 | 60.89 |
| PGSC0003DMT400037158 | Potato | mitochondrion | 57.51 | 59.03 |
| Solyc03g025950.2.1 | Tomato | plastid | 57.08 | 58.59 |
| KRH35342 | Soybean | endoplasmic reticulum | 56.65 | 56.17 |
| AT2G24940.1 | Thale cress | nucleus | 20.17 | 47.0 |
| TraesCS1D01G165500.1 | Wheat | golgi, plastid | 45.49 | 43.44 |
| TraesCS1B01G191100.2 | Wheat | plastid | 45.06 | 43.03 |
| TraesCS1A01G173200.3 | Wheat | golgi, plastid | 44.64 | 42.62 |
| EER93976 | Sorghum | plastid | 45.49 | 40.93 |
| Os10t0502500-04 | Rice | plastid | 44.21 | 38.87 |
| HORVU1Hr1G045610.5 | Barley | plastid | 44.21 | 36.01 |
| AT4G14965.1 | Thale cress | golgi | 21.03 | 20.0 |
Protein Annotations
| MapMan:11.3.2.1.4 | Gene3D:3.10.120.10 | EntrezGene:824050 | ProteinID:AEE78470.1 | EMBL:AF153283 | EMBL:AF419567 |
| ArrayExpress:AT3G48890 | EnsemblPlantsGene:AT3G48890 | RefSeq:AT3G48890 | TAIR:AT3G48890 | RefSeq:AT3G48890-TAIR-G | EnsemblPlants:AT3G48890.1 |
| TAIR:AT3G48890.1 | Symbol:ATMP2 | EMBL:AY079104 | ProteinID:CAB87917.1 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005496 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0008289 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019904 |
| GO:GO:0020037 | InterPro:IPR001199 | InterPro:IPR036400 | RefSeq:NP_190458.1 | PFAM:PF00173 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF45 | UniProt:Q9M2Z4 | SMART:SM01117 | SUPFAM:SSF55856 |
| TMHMM:TMhelix | UniParc:UPI00000A2078 | SEG:seg | : | : | : |
Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
Coordinates
chr3:+:18129452..18131592
Molecular Weight (calculated)
25383.6 Da
IEP (calculated)
4.258
GRAVY (calculated)
-0.455
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.