Factsheet for Bra018028.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
endoplasmic reticulum 4
plasma membrane 3
extracellular 2
vacuole 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48890.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G48890.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G48890.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71101	Canola	endoplasmic reticulum	97.75	97.75
CDY05880	Canola	endoplasmic reticulum	96.4	96.4
AT3G48890.1	Thale cress	endoplasmic reticulum	72.52	69.1
VIT_16s0100g01280.t01	Wine grape	endoplasmic reticulum	66.22	68.37
Bra019571.1-P	Field mustard	cytosol	37.84	63.64
KRG91473	Soybean	endoplasmic reticulum	61.71	60.89
PGSC0003DMT400037158	Potato	mitochondrion	62.16	60.79
Solyc03g025950.2.1	Tomato	plastid	61.71	60.35
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	57.21	58.26
KRH35342	Soybean	endoplasmic reticulum	60.81	57.45
Bra032055.1-P	Field mustard	cytosol	22.97	51.0
TraesCS1D01G165500.1	Wheat	golgi, plastid	48.65	44.26
TraesCS1B01G191100.2	Wheat	plastid	47.75	43.44
TraesCS1A01G173200.3	Wheat	golgi, plastid	46.85	42.62
Os10t0502500-04	Rice	plastid	49.55	41.51
EER93976	Sorghum	plastid	48.2	41.31
HORVU1Hr1G045610.5	Barley	plastid	46.4	36.01
Bra037079.1-P	Field mustard	golgi	22.07	20.16

Protein Annotations

MapMan:11.3.2.1.4	Gene3D:3.10.120.10	EnsemblPlantsGene:Bra018028	EnsemblPlants:Bra018028.1	EnsemblPlants:Bra018028.1-P	InterPro:Cyt_B5-like_heme/steroid-bd
InterPro:Cyt_B5-like_heme/steroid_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904	InterPro:IPR001199	InterPro:IPR036400
UniProt:M4DNE1	PFAM:PF00173	PANTHER:PTHR10281	PANTHER:PTHR10281:SF45	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI000253F296	SEG:seg	:	:	:

Description

AT3G48890 (E=6e-074) ATMP2, ATMAPR3, MSBP2, MAPR3 | ATMP2; heme binding

Coordinates

chrA06:-:9612177..9613280

Molecular Weight (calculated)

24401.3 Da

IEP (calculated)

4.177

GRAVY (calculated)

-0.529

Length

222 amino acids

Sequence
(BLAST)

001: MVVELWETVK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEEHRP RSTEDYPQPE PLPPPVQLGE ITEEELKQYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE ETDLTGDISG LGPFELDALQ DWEYKFMSKY VKVGTIQKND GECKESAEPS TNTGQEASAE VAHGETSRSI
201: EEKTEETTEK KDVANGDAAK ED

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.