Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 2
- golgi 2
- plasma membrane 3
- vacuole 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019571.1-P | Field mustard | cytosol | 53.88 | 89.39 |
| CDY37905 | Canola | cytosol | 52.05 | 86.36 |
| CDY71101 | Canola | endoplasmic reticulum | 69.41 | 68.47 |
| CDY05880 | Canola | endoplasmic reticulum | 68.04 | 67.12 |
| CDY61583 | Canola | endoplasmic reticulum, extracellular, golgi | 52.97 | 53.21 |
| CDY00522 | Canola | endoplasmic reticulum, extracellular, golgi | 52.05 | 52.29 |
| CDY36148 | Canola | nucleus | 19.63 | 43.0 |
| TraesCS1D01G165500.1 | Wheat | golgi, plastid | 44.29 | 39.75 |
| TraesCS1A01G173200.3 | Wheat | golgi, plastid | 43.38 | 38.93 |
| TraesCS1B01G191100.2 | Wheat | plastid | 43.38 | 38.93 |
| EER93976 | Sorghum | plastid | 43.38 | 36.68 |
| Os10t0502500-04 | Rice | plastid | 43.84 | 36.23 |
| HORVU1Hr1G045610.5 | Barley | plastid | 43.38 | 33.22 |
| CDY08286 | Canola | golgi | 21.0 | 18.93 |
| CDY06492 | Canola | golgi | 21.0 | 18.85 |
Protein Annotations
| MapMan:11.3.2.1.4 | Gene3D:3.10.120.10 | GO:A0A078DD53 | EnsemblPlants:CDX87002 | ProteinID:CDX87002 | ProteinID:CDX87002.1 |
| ncoils:Coil | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | EnsemblPlantsGene:GSBRNA2T00145858001 | InterPro:IPR001199 | InterPro:IPR036400 |
| PFAM:PF00173 | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF45 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix |
| UniParc:UPI0004EE7973 | SEG:seg | : | : | : | : |
Description
BnaC03g52720D
Coordinates
chrLK031848:-:1472077..1473424
Molecular Weight (calculated)
24293.4 Da
IEP (calculated)
4.268
GRAVY (calculated)
-0.491
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVVVVQLWE TLKETITAYT GLSPAAFFTV VALAFAIYQV VSGFFASPEE HRPRSTEVYP PSEPLPPPVQ LGEITEEELK QYDGSDSKKP LLMAIKGQIY
101: DVSQSRLFRN WGGLRVDASR ALAKMSFEEN DLTGDISGLG PFELDALQDW EYKFMSKYVK VGTIQKKDEE GKEKTEDSTN TGEEASATTV GETSRSVEEK
201: TIETTEKKDV ADGDAAKEE
101: DVSQSRLFRN WGGLRVDASR ALAKMSFEEN DLTGDISGLG PFELDALQDW EYKFMSKYVK VGTIQKKDEE GKEKTEDSTN TGEEASATTV GETSRSVEEK
201: TIETTEKKDV ADGDAAKEE
001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE
Arabidopsis Description
MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.