CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	98.62	98.62
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	98.62	98.62
AT5G52240.1	Thale cress	endoplasmic reticulum	79.36	78.64
TraesCS1A01G173400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	55.96	65.24
KRH09074	Soybean	endoplasmic reticulum	60.09	59.01
KRH38500	Soybean	endoplasmic reticulum	58.72	58.18
CDY71101	Canola	endoplasmic reticulum	58.72	57.66
CDY05880	Canola	endoplasmic reticulum	58.26	57.21
TraesCS1D01G165400.1	Wheat	plastid	57.8	56.0
TraesCS1B01G191000.1	Wheat	golgi	57.8	56.0
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	56.88	55.61
HORVU1Hr1G045630.3	Barley	plasma membrane	58.72	55.41
Os10t0502600-01	Rice	plasma membrane, plastid	57.8	54.31
Zm00001d013914_P001	Maize	extracellular, plasma membrane, plastid	56.88	53.45
CDX87002	Canola	endoplasmic reticulum	53.21	52.97
CDY37905	Canola	cytosol	31.19	51.52
CDY36148	Canola	nucleus	22.94	50.0
GSMUA_Achr5P12190_001	Banana	nucleus	55.5	47.27
GSMUA_Achr11P...	Banana	plasma membrane	56.88	46.62
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	53.67	45.35
TraesCS6D01G218900.1	Wheat	cytosol, endoplasmic reticulum, plastid	46.33	35.19
TraesCS6B01G264900.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.25	34.56
Os02t0640300-01	Rice	plasma membrane	50.0	32.73
Zm00001d017380_P001	Maize	plastid	51.83	31.65
HORVU6Hr1G060500.1	Barley	cytosol, mitochondrion, nucleus	45.87	31.65
TraesCS6A01G235900.1	Wheat	cytosol	45.87	30.77
Zm00001d032531_P001	Maize	plasma membrane	57.34	30.56
EES05839	Sorghum	plastid	49.08	29.64
CDY08286	Canola	golgi	22.48	20.16
CDY06492	Canola	golgi	22.48	20.08

Protein Annotations

EnsemblPlants:CDY61583	EnsemblPlantsGene:GSBRNA2T00034030001	Gene3D:3.10.120.10	GO:A0A078JBR7	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199	InterPro:IPR036400	PANTHER:PTHR10281
PANTHER:PTHR10281:SF62	PFAM:PF00173	ProteinID:CDY61583	ProteinID:CDY61583.1	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0004EC1413	UniProt:A0A078JBR7	MapMan:11.3.2.1.4	:

Description

BnaCnng38080DBnaCnng38080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBR7]

Coordinates

chrLK034013:-:22418..23667

Molecular Weight (calculated)

24107.2 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.337

Length

218 amino acids

Sequence
(BLAST)

001: MALLLWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVVSG WFASPFDDVR RHQRARSSAA EEAPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DISGLGPFEL EALQDWEYKF NSKYATVGTV KVTVSEAETA SVSEPAETDD GDAHVTKQEP
201: TVVDKNLETP AESDVKNE

Best Arabidopsis Sequence Match ( AT5G52240.1 )
(BLAST)

001: MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ EEEPPIPQPV QVGEITEEEL KQYDGSDPQK PLLMAIKHQI
101: YDVTQSRMFY GPGGPYALFA GKDASRALAK MSFEEKDLTW DVSGLGPFEL DALQDWEYKF MSKYAKVGTV KVAGSEPETA SVSEPTENVE QDAHVTTTPG
201: KTVVDKSDDA PAETVLKKEE

Arabidopsis Description

MSBP1Membrane steroid-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFM6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.