Factsheet for TraesCS1D01G165400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G191000.1	Wheat	golgi	99.11	99.11
TraesCS1A01G173400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.11	90.37
HORVU1Hr1G045630.3	Barley	plasma membrane	90.22	87.88
Os10t0502600-01	Rice	plasma membrane, plastid	81.78	79.31
Zm00001d013914_P001	Maize	extracellular, plasma membrane, plastid	78.22	75.86
EER91417	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	71.56	72.2
KRH09074	Soybean	endoplasmic reticulum	58.67	59.46
CDY61583	Canola	endoplasmic reticulum, extracellular, golgi	56.0	57.8
Bra028301.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	55.56	57.34
CDY00522	Canola	endoplasmic reticulum, extracellular, golgi	55.56	57.34
KRH38500	Soybean	endoplasmic reticulum	56.0	57.27
AT5G52240.1	Thale cress	endoplasmic reticulum	56.0	57.27
GSMUA_Achr11P...	Banana	endoplasmic reticulum, nucleus, plastid	64.0	55.81
GSMUA_Achr11P...	Banana	plasma membrane	61.78	52.26
TraesCS6D01G336900.1	Wheat	cytosol, nucleus, plastid	23.11	50.98
TraesCS1D01G165500.1	Wheat	golgi, plastid	52.44	48.36
TraesCS4D01G178900.2	Wheat	endoplasmic reticulum	38.67	44.39
TraesCS6D01G218900.1	Wheat	cytosol, endoplasmic reticulum, plastid	55.11	43.21
TraesCS4D01G256800.1	Wheat	endoplasmic reticulum	23.11	21.94

Protein Annotations

EnsemblPlants:TraesCS1D01G165400.1	EnsemblPlantsGene:TraesCS1D01G165400	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF64	PFAM:PF00173	SEG:seg	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	MapMan:11.3.2.1.4	:	:	:

Description

No Description!

Coordinates

chr1D:+:236437183..236438922

Molecular Weight (calculated)

24322.5 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.444

Length

225 amino acids

Sequence
(BLAST)

001: MAVAELWETL KQAILAYTGL SPTAFFTAVA VAAALYHVVS GIFAPPPPPR QRPLEEPEAE PLPPPVQLGE VDEEELRQYD GSDPKKPLLM AIKGQIYDVT
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE PQDLNGDTSG LGPFELDALQ DWEYKFMSKY VKVGTIKKAA PAEDGTTSTS PETNETVTAE AETEKAPATE
201: HKPREVSSEE VKEKEATADA VSAES

Best Arabidopsis Sequence Match ( AT3G48890.1 )
(BLAST)

001: MVQQIWETLK ETITAYTGLS PAAFFTVLAL AFAVYQVVSG FFVSPEVHRP RSLEVQPQSE PLPPPVQLGE ITEEELKLYD GSDSKKPLLM AIKGQIYDVS
101: QSRMFYGPGG PYALFAGKDA SRALAKMSFE DQDLTGDISG LGAFELEALQ DWEYKFMSKY VKVGTIQKKD GEGKESSEPS EAKTASAEGL STNTGEEASA
201: ITHDETSRST GEKIAETTEK KDVATDDDDA AKE

Arabidopsis Description

MSBP2Membrane steroid-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.